Variant report

Variant	rs2310859
Chromosome Location	chr3:140642612-140642613
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:140634376..140636295-chr3:140641836..140643560,2	MCF-7	breast:
2	chr3:140640464..140644389-chr3:140659845..140663007,5	MCF-7	breast:
3	chr3:140641570..140644550-chr3:140649016..140650744,2	K562	blood:

Variant related genes	Relation type
ENSG00000114120	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1047330	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10935413	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10935414	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1109282	0.88[ASN][1000 genomes]
rs1109283	0.89[ASN][1000 genomes]
rs11710204	0.89[ASN][1000 genomes]
rs11713816	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11718040	0.81[ASN][1000 genomes]
rs11718539	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11720342	0.81[ASN][1000 genomes]
rs12489397	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13063450	0.83[EUR][1000 genomes]
rs13099706	0.83[EUR][1000 genomes]
rs1401509	0.93[AFR][1000 genomes]
rs1568337	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1593623	0.86[AMR][1000 genomes]
rs16850915	0.81[ASN][1000 genomes]
rs2081662	0.83[EUR][1000 genomes]
rs2292919	0.87[ASN][1000 genomes]
rs2311491	0.83[EUR][1000 genomes]
rs2555702	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2555707	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2871615	0.88[ASN][1000 genomes]
rs35140461	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4068843	0.86[AMR][1000 genomes]
rs4524250	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4528914	0.82[EUR][1000 genomes]
rs4538351	0.83[EUR][1000 genomes]
rs61151473	0.89[ASN][1000 genomes]
rs6439964	0.83[EUR][1000 genomes]
rs6439969	0.91[AMR][1000 genomes]
rs6764740	0.82[EUR][1000 genomes]
rs6767867	0.82[EUR][1000 genomes]
rs6770562	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6772634	0.83[EUR][1000 genomes]
rs6773249	0.83[EUR][1000 genomes]
rs6785007	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6785892	0.83[EUR][1000 genomes]
rs6788711	0.83[EUR][1000 genomes]
rs6789045	0.82[EUR][1000 genomes]
rs6789116	0.82[EUR][1000 genomes]
rs6797079	0.83[EUR][1000 genomes]
rs6809144	0.93[AMR][1000 genomes]
rs713354	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72991025	0.90[ASN][1000 genomes]
rs72991046	0.89[ASN][1000 genomes]
rs7621150	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7638206	0.89[ASN][1000 genomes]
rs7643287	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7643434	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7643614	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7644725	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7652381	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs765990	0.83[EUR][1000 genomes]
rs877142	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs957093	0.83[EUR][1000 genomes]
rs9833041	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591865	chr3:140396022-140728850	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1005522	chr3:140454632-140685915	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv536732	chr3:140454632-140685915	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140641200-140644400	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr3:140641600-140643200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr3:140641600-140646800	Weak transcription	Pancreas	Pancrea
4	chr3:140642000-140643000	Enhancers	Left Ventricle	heart
5	chr3:140642000-140644400	Enhancers	Skeletal Muscle Female	skeletal muscle

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