Variant report

Variant	rs6770562
Chromosome Location	chr3:140658315-140658316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140645140..140648440-chr3:140656551..140659391,3	K562	blood:
2	chr3:140657892..140662868-chr3:140689081..140692689,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114120	Chromatin interaction
ENSG00000248773	Chromatin interaction

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs1047330	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1056126	0.83[ASN][1000 genomes]
rs1056127	0.82[ASN][1000 genomes]
rs10935413	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10935414	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11707116	0.85[ASN][1000 genomes]
rs11710204	0.96[ASN][1000 genomes]
rs11710926	0.83[ASN][1000 genomes]
rs11711131	0.83[ASN][1000 genomes]
rs11713505	0.83[ASN][1000 genomes]
rs11713816	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11714438	0.83[ASN][1000 genomes]
rs11715248	0.83[ASN][1000 genomes]
rs11717620	0.83[ASN][1000 genomes]
rs11718040	0.83[ASN][1000 genomes]
rs11718539	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11718563	0.83[ASN][1000 genomes]
rs11720342	0.83[ASN][1000 genomes]
rs12489397	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13063450	0.88[EUR][1000 genomes]
rs13099706	0.88[EUR][1000 genomes]
rs1568337	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1593623	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1593624	0.83[ASN][1000 genomes]
rs16850915	0.83[ASN][1000 genomes]
rs16850917	0.83[ASN][1000 genomes]
rs16850921	0.83[ASN][1000 genomes]
rs16850924	0.82[ASN][1000 genomes]
rs16850926	0.83[ASN][1000 genomes]
rs16851001	0.85[EUR][1000 genomes]
rs2042759	0.83[EUR][1000 genomes]
rs2081662	0.88[EUR][1000 genomes]
rs2292919	0.96[ASN][1000 genomes]
rs2310859	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2311491	0.88[EUR][1000 genomes]
rs2555702	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2555707	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35140461	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3755764	0.83[ASN][1000 genomes]
rs3755765	0.83[ASN][1000 genomes]
rs3773835	0.83[ASN][1000 genomes]
rs3773837	0.83[ASN][1000 genomes]
rs3773838	0.83[ASN][1000 genomes]
rs4068843	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4524250	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4528914	0.87[EUR][1000 genomes]
rs4538351	0.88[EUR][1000 genomes]
rs57151068	0.83[ASN][1000 genomes]
rs57526660	0.83[ASN][1000 genomes]
rs57799705	0.83[ASN][1000 genomes]
rs59128309	0.83[ASN][1000 genomes]
rs59221985	0.83[ASN][1000 genomes]
rs61151473	0.94[ASN][1000 genomes]
rs61629363	0.83[ASN][1000 genomes]
rs61708145	0.83[ASN][1000 genomes]
rs6439962	0.83[ASN][1000 genomes]
rs6439964	0.88[EUR][1000 genomes]
rs6439969	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67142314	0.85[EUR][1000 genomes]
rs6764740	0.87[EUR][1000 genomes]
rs6767867	0.87[EUR][1000 genomes]
rs6772634	0.88[EUR][1000 genomes]
rs6773249	0.88[EUR][1000 genomes]
rs6785007	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6785892	0.88[EUR][1000 genomes]
rs6788711	0.88[EUR][1000 genomes]
rs6789045	0.87[EUR][1000 genomes]
rs6789116	0.87[EUR][1000 genomes]
rs6789265	0.85[EUR][1000 genomes]
rs6797079	0.88[EUR][1000 genomes]
rs6809144	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6810200	0.83[ASN][1000 genomes]
rs713354	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72991046	0.94[ASN][1000 genomes]
rs7621150	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7626525	0.85[ASN][1000 genomes]
rs7627987	0.85[EUR][1000 genomes]
rs7631373	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7632043	0.85[ASN][1000 genomes]
rs7643287	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7643434	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7643614	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7644725	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7649116	0.81[ASN][1000 genomes]
rs7650179	0.85[EUR][1000 genomes]
rs7650190	0.85[EUR][1000 genomes]
rs7652381	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs765990	0.88[EUR][1000 genomes]
rs877142	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs957093	0.88[EUR][1000 genomes]
rs9833041	0.85[EUR][1000 genomes]
rs9880468	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591865	chr3:140396022-140728850	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1005522	chr3:140454632-140685915	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv536732	chr3:140454632-140685915	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv521218	chr3:140643038-140665147	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv3364537	chr3:140646303-140668571	ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140650400-140660200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:140657000-140659800	Weak transcription	Hela-S3	cervix

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