Variant report

Variant	rs765990
Chromosome Location	chr3:140730389-140730390
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:140730075..140730963-chr3:140768335..140768843,2	MCF-7	breast:
2	chr3:140617094..140617726-chr3:140730314..140731025,2	MCF-7	breast:
3	chr3:140729944..140731021-chr3:140824351..140825477,16	MCF-7	breast:
4	chr3:140730331..140730836-chr3:140824547..140825369,2	MCF-7	breast:
5	chr3:140730037..140731014-chr3:140910554..140911830,26	MCF-7	breast:
6	chr3:140730100..140731030-chr3:140824316..140825563,6	K562	blood:
7	chr3:140730111..140731019-chr3:140910769..140911416,5	K562	blood:
8	chr3:140730037..140730966-chr3:140911200..140912285,7	MCF-7	breast:

No data

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs1047330	0.85[EUR][1000 genomes]
rs1056126	0.86[ASN][1000 genomes]
rs1056127	0.85[ASN][1000 genomes]
rs10935413	0.86[EUR][1000 genomes]
rs10935414	0.86[EUR][1000 genomes]
rs11707116	0.84[ASN][1000 genomes]
rs11710926	0.86[ASN][1000 genomes]
rs11711131	0.86[ASN][1000 genomes]
rs11713505	0.86[ASN][1000 genomes]
rs11713816	0.86[EUR][1000 genomes]
rs11714438	0.86[ASN][1000 genomes]
rs11715248	0.86[ASN][1000 genomes]
rs11717097	1.00[ASN][1000 genomes]
rs11717620	0.86[ASN][1000 genomes]
rs11718040	0.84[ASN][1000 genomes]
rs11718539	0.90[EUR][1000 genomes]
rs11718563	0.86[ASN][1000 genomes]
rs11720342	0.84[ASN][1000 genomes]
rs12489397	0.92[EUR][1000 genomes]
rs13063450	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13099706	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1568337	0.90[EUR][1000 genomes]
rs1593623	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1593624	0.86[ASN][1000 genomes]
rs16850915	0.84[ASN][1000 genomes]
rs16850917	0.86[ASN][1000 genomes]
rs16850921	0.86[ASN][1000 genomes]
rs16850924	0.85[ASN][1000 genomes]
rs16850926	0.86[ASN][1000 genomes]
rs16851001	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2042759	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2081662	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2310859	0.83[EUR][1000 genomes]
rs2311491	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2555702	0.92[EUR][1000 genomes]
rs2555707	0.92[EUR][1000 genomes]
rs35140461	0.90[EUR][1000 genomes]
rs3755764	0.86[ASN][1000 genomes]
rs3755765	0.86[ASN][1000 genomes]
rs3773835	0.86[ASN][1000 genomes]
rs3773837	0.86[ASN][1000 genomes]
rs3773838	0.86[ASN][1000 genomes]
rs4068843	0.95[EUR][1000 genomes]
rs4380393	0.97[ASN][1000 genomes]
rs4524250	0.88[EUR][1000 genomes]
rs4528914	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4538351	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57151068	0.86[ASN][1000 genomes]
rs57526660	0.86[ASN][1000 genomes]
rs57799705	0.86[ASN][1000 genomes]
rs59128309	0.86[ASN][1000 genomes]
rs59221985	0.86[ASN][1000 genomes]
rs61052022	0.84[ASN][1000 genomes]
rs61629363	0.86[ASN][1000 genomes]
rs61708145	0.86[ASN][1000 genomes]
rs6439962	0.86[ASN][1000 genomes]
rs6439964	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6439965	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6439969	0.96[EUR][1000 genomes]
rs67142314	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6764740	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6767867	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6770562	0.88[EUR][1000 genomes]
rs6772634	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6773249	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6785007	0.90[EUR][1000 genomes]
rs6785892	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6788711	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6789045	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6789116	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6789265	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6797079	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6809144	0.96[EUR][1000 genomes]
rs6810200	0.86[ASN][1000 genomes]
rs713354	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7621150	0.90[EUR][1000 genomes]
rs7626525	0.84[ASN][1000 genomes]
rs7627987	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7631373	0.96[EUR][1000 genomes]
rs7632043	0.84[ASN][1000 genomes]
rs7643287	0.90[EUR][1000 genomes]
rs7643434	0.90[EUR][1000 genomes]
rs7643614	0.90[EUR][1000 genomes]
rs7644725	0.90[EUR][1000 genomes]
rs7649116	0.85[ASN][1000 genomes]
rs7650179	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7650190	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7652381	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs877142	0.90[EUR][1000 genomes]
rs957093	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9833041	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9880468	0.87[EUR][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140728800-140730400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr3:140729000-140734600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:140729400-140730800	Enhancers	Brain Germinal Matrix	brain
4	chr3:140729800-140732600	Enhancers	Dnd41	blood
5	chr3:140730000-140730400	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
6	chr3:140730000-140730400	Enhancers	Brain Hippocampus Middle	brain
7	chr3:140730000-140730600	Enhancers	Fetal Brain Female	brain
8	chr3:140730000-140731000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:140730000-140731600	Enhancers	HSMMtube	muscle
10	chr3:140730000-140733000	Enhancers	Fetal Muscle Leg	muscle
11	chr3:140730200-140730400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
12	chr3:140730200-140730400	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr3:140730200-140730400	Enhancers	HSMM	muscle
14	chr3:140730200-140730600	Enhancers	Brain Anterior Caudate	brain
15	chr3:140730200-140730600	Enhancers	Brain Cingulate Gyrus	brain
16	chr3:140730200-140730800	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr3:140730200-140730800	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
18	chr3:140730200-140730800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr3:140730200-140730800	Enhancers	Colon Smooth Muscle	Colon
20	chr3:140730200-140730800	Enhancers	Fetal Brain Male	brain
21	chr3:140730200-140730800	Enhancers	Fetal Heart	heart
22	chr3:140730200-140731000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:140730200-140731600	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr3:140730200-140731800	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr3:140730200-140732000	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr3:140730200-140732000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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