Variant report

Variant	rs957093
Chromosome Location	chr3:140731422-140731423
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140725449..140727394-chr3:140730861..140733753,2	MCF-7	breast:

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs1047330	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1056126	0.84[ASN][1000 genomes]
rs1056127	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs10935413	0.86[EUR][1000 genomes]
rs10935414	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs1109282	0.82[JPT][hapmap]
rs1109283	0.83[JPT][hapmap]
rs11707116	0.82[ASN][1000 genomes]
rs11710926	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs11711131	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs11713505	0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs11713816	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs11714438	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs11715248	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs11717097	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11717620	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs11718040	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs11718539	1.00[CEU][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs11718563	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs11720342	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs12489397	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs13063450	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13099706	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1568337	1.00[CEU][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs1593623	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1593624	0.84[ASN][1000 genomes]
rs16850915	0.82[ASN][1000 genomes]
rs16850917	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs16850921	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs16850924	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs16850926	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs16851001	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2042759	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2081662	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2292919	0.82[JPT][hapmap]
rs2310859	0.83[EUR][1000 genomes]
rs2311491	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2555702	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2555707	1.00[CEU][hapmap];0.82[JPT][hapmap];0.92[EUR][1000 genomes]
rs2871615	0.82[JPT][hapmap]
rs35140461	0.90[EUR][1000 genomes]
rs3755764	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs3755765	0.84[ASN][1000 genomes]
rs3773835	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs3773837	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs3773838	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs4068843	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4380393	0.95[ASN][1000 genomes]
rs4524250	0.88[EUR][1000 genomes]
rs4528914	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4538351	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57151068	0.84[ASN][1000 genomes]
rs57526660	0.84[ASN][1000 genomes]
rs57799705	0.84[ASN][1000 genomes]
rs59128309	0.84[ASN][1000 genomes]
rs59221985	0.84[ASN][1000 genomes]
rs61052022	0.86[ASN][1000 genomes]
rs61629363	0.84[ASN][1000 genomes]
rs61708145	0.84[ASN][1000 genomes]
rs6439962	0.84[ASN][1000 genomes]
rs6439964	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6439965	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6439969	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67142314	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6764740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6767867	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6770562	0.88[EUR][1000 genomes]
rs6772634	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6773249	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6785007	0.90[EUR][1000 genomes]
rs6785892	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6788711	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6789045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6789116	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6789265	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6797079	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6809144	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6810200	0.84[ASN][1000 genomes]
rs713354	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7621150	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7626525	0.82[ASN][1000 genomes]
rs7627987	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7631373	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7632043	0.81[ASN][1000 genomes]
rs7643287	1.00[CEU][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs7643434	1.00[CEU][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs7643614	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7644725	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7649116	0.83[ASN][1000 genomes]
rs7650179	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7650190	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7652381	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs765990	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs877142	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs9833041	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9880468	0.87[EUR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140729000-140734600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:140729800-140732600	Enhancers	Dnd41	blood
3	chr3:140730000-140731600	Enhancers	HSMMtube	muscle
4	chr3:140730000-140733000	Enhancers	Fetal Muscle Leg	muscle
5	chr3:140730200-140731600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:140730200-140731800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr3:140730200-140732000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr3:140730200-140732000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:140730600-140731600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr3:140730600-140732000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr3:140730600-140732000	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr3:140730600-140732400	Weak transcription	HSMM	muscle
13	chr3:140730600-140732600	Weak transcription	Spleen	Spleen
14	chr3:140730800-140731600	Enhancers	H1 Cell Line	embryonic stem cell
15	chr3:140730800-140731800	Weak transcription	Brain Germinal Matrix	brain
16	chr3:140730800-140732000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr3:140730800-140732600	Weak transcription	Colon Smooth Muscle	Colon
18	chr3:140730800-140732600	Weak transcription	Fetal Stomach	stomach
19	chr3:140731000-140732400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:140731000-140732400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr3:140731000-140732400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr3:140731400-140731600	Enhancers	H9 Cell Line	embryonic stem cell

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