Variant report

Variant	rs6789116
Chromosome Location	chr3:140729968-140729969
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140729944..140731021-chr3:140824351..140825477,16	MCF-7	breast:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs1047330	0.84[EUR][1000 genomes]
rs1056126	0.84[ASN][1000 genomes]
rs1056127	0.83[ASN][1000 genomes]
rs10935413	0.85[EUR][1000 genomes]
rs10935414	0.85[EUR][1000 genomes]
rs11707116	0.82[ASN][1000 genomes]
rs11710926	0.84[ASN][1000 genomes]
rs11711131	0.84[ASN][1000 genomes]
rs11713505	0.84[ASN][1000 genomes]
rs11713816	0.85[EUR][1000 genomes]
rs11714438	0.84[ASN][1000 genomes]
rs11715248	0.84[ASN][1000 genomes]
rs11717097	0.97[ASN][1000 genomes]
rs11717620	0.84[ASN][1000 genomes]
rs11718040	0.82[ASN][1000 genomes]
rs11718539	0.88[EUR][1000 genomes]
rs11718563	0.84[ASN][1000 genomes]
rs11720342	0.82[ASN][1000 genomes]
rs12489397	0.91[EUR][1000 genomes]
rs13063450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13099706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1568337	0.88[EUR][1000 genomes]
rs1593623	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1593624	0.84[ASN][1000 genomes]
rs16850915	0.82[ASN][1000 genomes]
rs16850917	0.84[ASN][1000 genomes]
rs16850921	0.84[ASN][1000 genomes]
rs16850924	0.83[ASN][1000 genomes]
rs16850926	0.84[ASN][1000 genomes]
rs16851001	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2042759	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2081662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2310859	0.82[EUR][1000 genomes]
rs2311491	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2555702	0.91[EUR][1000 genomes]
rs2555707	0.91[EUR][1000 genomes]
rs35140461	0.88[EUR][1000 genomes]
rs3755764	0.84[ASN][1000 genomes]
rs3755765	0.84[ASN][1000 genomes]
rs3773835	0.84[ASN][1000 genomes]
rs3773837	0.84[ASN][1000 genomes]
rs3773838	0.84[ASN][1000 genomes]
rs4068843	0.94[EUR][1000 genomes]
rs4380393	1.00[ASN][1000 genomes]
rs4524250	0.87[EUR][1000 genomes]
rs4528914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4538351	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57151068	0.84[ASN][1000 genomes]
rs57526660	0.84[ASN][1000 genomes]
rs57799705	0.84[ASN][1000 genomes]
rs59128309	0.84[ASN][1000 genomes]
rs59221985	0.84[ASN][1000 genomes]
rs61052022	0.81[ASN][1000 genomes]
rs61629363	0.84[ASN][1000 genomes]
rs61708145	0.84[ASN][1000 genomes]
rs6439962	0.84[ASN][1000 genomes]
rs6439964	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6439965	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6439969	0.95[EUR][1000 genomes]
rs67142314	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6764740	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6767867	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6770562	0.87[EUR][1000 genomes]
rs6772634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6773249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6785007	0.88[EUR][1000 genomes]
rs6785892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6788711	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6789045	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6789265	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6797079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6809144	0.95[EUR][1000 genomes]
rs6810200	0.84[ASN][1000 genomes]
rs713354	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7621150	0.88[EUR][1000 genomes]
rs7626525	0.82[ASN][1000 genomes]
rs7627987	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7631373	0.95[EUR][1000 genomes]
rs7632043	0.81[ASN][1000 genomes]
rs7643287	0.88[EUR][1000 genomes]
rs7643434	0.88[EUR][1000 genomes]
rs7643614	0.88[EUR][1000 genomes]
rs7644725	0.88[EUR][1000 genomes]
rs7649116	0.83[ASN][1000 genomes]
rs7650179	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7650190	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7652381	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs765990	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs877142	0.88[EUR][1000 genomes]
rs957093	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9833041	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9880468	0.86[EUR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140728800-140730200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:140728800-140730400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:140729000-140730000	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:140729000-140734600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:140729400-140730800	Enhancers	Brain Germinal Matrix	brain
6	chr3:140729800-140732600	Enhancers	Dnd41	blood

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