Variant report

Variant	rs6810200
Chromosome Location	chr3:140701127-140701128
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140693357..140695155-chr3:140699773..140701643,2	K562	blood:
2	chr3:140692439..140694857-chr3:140699902..140701643,2	K562	blood:

Variant related genes	Relation type
ENSG00000114120	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1047330	0.85[ASN][1000 genomes]
rs1056126	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1056127	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10935413	0.87[ASN][1000 genomes]
rs10935414	0.87[ASN][1000 genomes]
rs1109282	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1109283	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11707116	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11710204	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11710926	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11711131	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11713505	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11713816	0.87[ASN][1000 genomes]
rs11714438	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11715248	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11717097	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11717620	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11718040	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11718539	0.89[ASN][1000 genomes]
rs11718563	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11720342	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12489397	0.89[ASN][1000 genomes]
rs13063450	0.86[ASN][1000 genomes]
rs13099706	0.86[ASN][1000 genomes]
rs1568337	0.89[ASN][1000 genomes]
rs1593624	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16850915	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16850917	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16850921	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16850924	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16850926	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2081662	0.86[ASN][1000 genomes]
rs2292919	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2311491	0.84[ASN][1000 genomes]
rs2555702	0.89[ASN][1000 genomes]
rs2555707	0.89[ASN][1000 genomes]
rs2871615	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35140461	0.89[ASN][1000 genomes]
rs3755764	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3755765	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3773835	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3773837	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3773838	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4380393	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4524250	0.88[ASN][1000 genomes]
rs4528914	0.84[ASN][1000 genomes]
rs4538351	0.85[ASN][1000 genomes]
rs57151068	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57526660	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57799705	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59128309	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59221985	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61052022	0.92[EUR][1000 genomes]
rs61151473	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61629363	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61708145	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6439962	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6439964	0.86[ASN][1000 genomes]
rs6764740	0.84[ASN][1000 genomes]
rs6770562	0.83[ASN][1000 genomes]
rs6772634	0.86[ASN][1000 genomes]
rs6773249	0.86[ASN][1000 genomes]
rs6785007	0.89[ASN][1000 genomes]
rs6785892	0.86[ASN][1000 genomes]
rs6788711	0.86[ASN][1000 genomes]
rs6789045	0.83[ASN][1000 genomes]
rs6789116	0.84[ASN][1000 genomes]
rs6797079	0.86[ASN][1000 genomes]
rs72991025	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72991046	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7621150	0.89[ASN][1000 genomes]
rs7626525	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7632043	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7638206	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7643287	0.89[ASN][1000 genomes]
rs7643434	0.89[ASN][1000 genomes]
rs7643614	0.89[ASN][1000 genomes]
rs7644725	0.89[ASN][1000 genomes]
rs7649116	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs765990	0.86[ASN][1000 genomes]
rs877142	0.89[ASN][1000 genomes]
rs957093	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591865	chr3:140396022-140728850	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6810200	SLC25A36	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140664200-140703800	Weak transcription	Aorta	Aorta
2	chr3:140695800-140701200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr3:140696000-140702800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr3:140697400-140701200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:140697400-140701200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr3:140697600-140701400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:140697600-140701600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr3:140699000-140701400	Weak transcription	HSMM	muscle
9	chr3:140699000-140701600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:140699800-140701600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:140700400-140704200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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