Variant report

Variant	rs11710204
Chromosome Location	chr3:140652440-140652441
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140651352..140654120-chr3:140658675..140660598,2	K562	blood:

Extended variants
information (count: 76 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1047330	0.93[ASN][1000 genomes]
rs1056126	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1056127	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10935413	0.98[ASN][1000 genomes]
rs10935414	0.98[ASN][1000 genomes]
rs1109282	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1109283	0.93[EUR][1000 genomes]
rs11707116	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11710926	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11711131	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11713505	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11713816	0.98[ASN][1000 genomes]
rs11714438	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11715248	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11717097	0.84[EUR][1000 genomes]
rs11717620	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11718040	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11718539	0.98[ASN][1000 genomes]
rs11718563	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11720342	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12489397	0.98[ASN][1000 genomes]
rs1568337	0.98[ASN][1000 genomes]
rs1593624	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16850915	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16850917	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16850921	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16850924	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16850926	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2292919	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2310859	0.89[ASN][1000 genomes]
rs2555702	0.98[ASN][1000 genomes]
rs2555707	0.98[ASN][1000 genomes]
rs2871615	0.88[EUR][1000 genomes]
rs35140461	0.98[ASN][1000 genomes]
rs3755764	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3755765	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3773835	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3773837	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3773838	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4380393	0.81[EUR][1000 genomes]
rs4524250	0.99[ASN][1000 genomes]
rs57151068	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57526660	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57799705	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59128309	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59221985	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61052022	0.81[EUR][1000 genomes]
rs61151473	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61629363	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61708145	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6439962	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6770562	0.96[ASN][1000 genomes]
rs6785007	0.98[ASN][1000 genomes]
rs6810200	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs713354	0.85[ASN][1000 genomes]
rs72991025	0.93[EUR][1000 genomes]
rs72991046	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7621150	0.98[ASN][1000 genomes]
rs7626525	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7632043	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7637899	0.81[EUR][1000 genomes]
rs7638206	0.91[EUR][1000 genomes]
rs7643287	0.98[ASN][1000 genomes]
rs7643434	0.98[ASN][1000 genomes]
rs7643614	0.98[ASN][1000 genomes]
rs7644725	0.98[ASN][1000 genomes]
rs7649116	0.86[ASN][1000 genomes]
rs7652381	0.85[ASN][1000 genomes]
rs877142	0.98[ASN][1000 genomes]
rs9880468	0.84[ASN][1000 genomes]
rs9880470	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591865	chr3:140396022-140728850	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1005522	chr3:140454632-140685915	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv536732	chr3:140454632-140685915	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv521218	chr3:140643038-140665147	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv3364537	chr3:140646303-140668571	ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11710204	SLC25A36	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140650400-140660200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:140651000-140653200	Weak transcription	Hela-S3	cervix
3	chr3:140652200-140652600	Active TSS	HepG2	liver

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