Variant report

Variant	rs11717097
Chromosome Location	chr3:140718837-140718838
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:140717229..140719563-chr3:140823264..140825476,2	MCF-7	breast:
2	chr3:140718651..140719525-chr3:140910863..140911815,6	K562	blood:
3	chr3:140717770..140720611-chr3:140820680..140823075,2	MCF-7	breast:
4	chr3:140660153..140662211-chr3:140718084..140720938,2	MCF-7	breast:
5	chr3:140718684..140720140-chr3:140824242..140825601,7	MCF-7	breast:
6	chr3:140717895..140719577-chr3:140910528..140912066,26	MCF-7	breast:
7	chr3:140616885..140617917-chr3:140718709..140719535,4	MCF-7	breast:
8	chr3:140718217..140720012-chr3:140910812..140911779,16	MCF-7	breast:
9	chr3:140718492..140720751-chr3:140723112..140725840,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000114120	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1056126	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1056127	1.00[CEU][hapmap];0.93[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1109282	0.81[JPT][hapmap];0.91[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1109283	0.82[JPT][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11707116	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11710204	0.84[EUR][1000 genomes]
rs11710926	1.00[CEU][hapmap];0.93[JPT][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11711131	0.93[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11713505	1.00[CEU][hapmap];0.87[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11714438	1.00[CEU][hapmap];0.93[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11715248	1.00[CEU][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11717620	1.00[CEU][hapmap];0.93[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11718040	0.93[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11718539	0.81[JPT][hapmap]
rs11718563	1.00[CEU][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11720342	0.93[JPT][hapmap];0.91[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13063450	1.00[ASN][1000 genomes]
rs13099706	1.00[ASN][1000 genomes]
rs1568337	0.81[JPT][hapmap]
rs1593623	0.91[ASN][1000 genomes]
rs1593624	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16850915	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16850917	1.00[CEU][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16850921	1.00[CEU][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16850924	1.00[CEU][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16850926	1.00[CEU][hapmap];0.93[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16851001	0.91[ASN][1000 genomes]
rs2042759	0.91[ASN][1000 genomes]
rs2081662	1.00[ASN][1000 genomes]
rs2292919	1.00[CEU][hapmap];0.81[JPT][hapmap];0.90[EUR][1000 genomes]
rs2311491	0.97[ASN][1000 genomes]
rs2555707	0.81[JPT][hapmap]
rs2871615	0.81[JPT][hapmap];0.80[EUR][1000 genomes]
rs3755764	1.00[CEU][hapmap];0.93[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3755765	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3773835	1.00[CEU][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3773837	1.00[CEU][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3773838	1.00[CEU][hapmap];0.93[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4380393	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4528914	0.97[ASN][1000 genomes]
rs4538351	0.99[ASN][1000 genomes]
rs57151068	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57526660	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57799705	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59128309	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59221985	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61052022	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61151473	0.95[EUR][1000 genomes]
rs61629363	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61708145	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6439962	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6439964	1.00[ASN][1000 genomes]
rs6439965	0.91[ASN][1000 genomes]
rs67142314	0.90[ASN][1000 genomes]
rs6764740	0.97[ASN][1000 genomes]
rs6767867	0.92[ASN][1000 genomes]
rs6772634	1.00[ASN][1000 genomes]
rs6773249	1.00[ASN][1000 genomes]
rs6785892	1.00[ASN][1000 genomes]
rs6788711	1.00[ASN][1000 genomes]
rs6789045	0.96[ASN][1000 genomes]
rs6789116	0.97[ASN][1000 genomes]
rs6789265	0.90[ASN][1000 genomes]
rs6797079	1.00[ASN][1000 genomes]
rs6810200	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs713354	1.00[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs72991025	0.86[EUR][1000 genomes]
rs72991046	0.95[EUR][1000 genomes]
rs7626525	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7627987	0.91[ASN][1000 genomes]
rs7632043	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7638206	0.84[EUR][1000 genomes]
rs7643287	0.81[JPT][hapmap]
rs7643434	0.81[JPT][hapmap]
rs7649116	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7650179	0.91[ASN][1000 genomes]
rs7650190	0.91[ASN][1000 genomes]
rs7652381	1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs765990	1.00[ASN][1000 genomes]
rs957093	0.97[ASN][1000 genomes]
rs9833041	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591865	chr3:140396022-140728850	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11717097	SLC25A36	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140718800-140719800	Enhancers	Dnd41	blood

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