Variant report

Variant	rs6809144
Chromosome Location	chr3:140737691-140737692
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140737164..140739325-chr3:140761875..140763616,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1047330	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10935413	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10935414	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11713816	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11718539	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12489397	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13063450	0.96[EUR][1000 genomes]
rs13099706	0.96[EUR][1000 genomes]
rs1568337	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1593623	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16851001	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2042759	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2081662	0.96[EUR][1000 genomes]
rs2310859	0.93[AMR][1000 genomes]
rs2311491	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2555702	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2555707	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35140461	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4068843	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4524250	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4528914	0.95[EUR][1000 genomes]
rs4538351	0.96[EUR][1000 genomes]
rs6439964	0.96[EUR][1000 genomes]
rs6439965	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6439969	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67142314	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6764740	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6767867	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6770562	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6772634	0.96[EUR][1000 genomes]
rs6773249	0.96[EUR][1000 genomes]
rs6785007	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6785892	0.96[EUR][1000 genomes]
rs6788711	0.96[EUR][1000 genomes]
rs6789045	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6789116	0.95[EUR][1000 genomes]
rs6789265	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6797079	0.96[EUR][1000 genomes]
rs713354	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7621150	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7627987	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7631373	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7643287	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7643434	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7643614	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7644725	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7650179	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7650190	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7652381	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs765990	0.96[EUR][1000 genomes]
rs877142	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs957093	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9816809	0.83[AFR][1000 genomes]
rs9833041	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9876562	0.85[AFR][1000 genomes]
rs9880468	0.83[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140732600-140738200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:140732800-140739400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:140733000-140739200	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:140733000-140739400	Weak transcription	HSMMtube	muscle
5	chr3:140735000-140738800	Weak transcription	HSMM	muscle
6	chr3:140737000-140739000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:140737000-140739200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:140737000-140739400	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr3:140737400-140739000	Weak transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links