Variant report
| Variant | rs9816809 |
|---|---|
| Chromosome Location | chr3:140755578-140755579 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs1047330 | 0.82[JPT][hapmap] |
| rs10935414 | 0.82[JPT][hapmap] |
| rs10935416 | 0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1109284 | 0.85[CEU][hapmap];0.90[TSI][hapmap] |
| rs11713816 | 0.82[JPT][hapmap] |
| rs11718539 | 0.82[JPT][hapmap] |
| rs11915229 | 0.96[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12489397 | 0.82[JPT][hapmap] |
| rs13099216 | 0.85[CEU][hapmap];0.90[TSI][hapmap] |
| rs13100471 | 0.85[CEU][hapmap] |
| rs1568337 | 0.82[JPT][hapmap] |
| rs1593623 | 0.84[AFR][1000 genomes] |
| rs2292919 | 0.82[JPT][hapmap] |
| rs2555702 | 0.82[JPT][hapmap] |
| rs2555707 | 0.82[JPT][hapmap] |
| rs5026385 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6439969 | 0.85[AFR][1000 genomes] |
| rs6762670 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6765380 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6769484 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6809144 | 0.83[AFR][1000 genomes] |
| rs713354 | 0.88[JPT][hapmap] |
| rs7616174 | 0.85[CEU][hapmap];0.90[TSI][hapmap] |
| rs7620524 | 0.85[CEU][hapmap];0.88[TSI][hapmap] |
| rs7621150 | 0.82[JPT][hapmap] |
| rs7638025 | 0.85[CEU][hapmap] |
| rs7643287 | 0.82[JPT][hapmap] |
| rs7643434 | 0.82[JPT][hapmap] |
| rs7643614 | 0.82[JPT][hapmap] |
| rs7644725 | 0.82[JPT][hapmap] |
| rs7652381 | 0.88[JPT][hapmap] |
| rs877142 | 0.82[JPT][hapmap] |
| rs878117 | 0.85[CEU][hapmap] |
| rs919154 | 0.85[CEU][hapmap] |
| rs9876562 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9917645 | 0.85[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv432488 | chr3:140752302-140790302 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:140755400-140758400 | Weak transcription | Brain Germinal Matrix | brain |
