Variant report

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1056127	0.80[JPT][hapmap]
rs10935416	0.83[EUR][1000 genomes]
rs1109284	0.85[CEU][hapmap];0.90[TSI][hapmap]
rs11710926	0.81[JPT][hapmap]
rs11711131	0.80[JPT][hapmap]
rs11714438	0.80[JPT][hapmap]
rs11715248	0.81[JPT][hapmap]
rs11717097	0.85[JPT][hapmap]
rs11717620	0.81[JPT][hapmap]
rs11718040	0.81[JPT][hapmap]
rs11718563	0.81[JPT][hapmap]
rs11720342	0.81[JPT][hapmap]
rs11915229	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13099216	0.85[CEU][hapmap];0.90[TSI][hapmap]
rs13100471	0.85[CEU][hapmap]
rs16850917	0.81[JPT][hapmap]
rs16850921	0.81[JPT][hapmap]
rs16850924	0.81[JPT][hapmap]
rs16850926	0.81[JPT][hapmap]
rs16851001	0.84[AFR][1000 genomes]
rs3755764	0.81[JPT][hapmap]
rs3773835	0.81[JPT][hapmap]
rs3773837	0.81[JPT][hapmap]
rs3773838	0.81[JPT][hapmap]
rs5026385	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6765380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6767867	0.83[AFR][1000 genomes]
rs6769484	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7616174	0.85[CEU][hapmap];0.90[TSI][hapmap]
rs7620524	0.85[CEU][hapmap];0.88[TSI][hapmap]
rs7638025	0.85[CEU][hapmap]
rs878117	0.85[CEU][hapmap]
rs919154	0.85[CEU][hapmap]
rs9816809	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9876562	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9917645	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432488	chr3:140752302-140790302	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6762670	S100A8	trans	brain	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140755400-140758400	Weak transcription	Brain Germinal Matrix	brain

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