Variant report

Variant	rs11915229
Chromosome Location	chr3:140758710-140758711
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10935416	0.86[EUR][1000 genomes]
rs1109284	0.85[CEU][hapmap];0.90[TSI][hapmap]
rs13099216	0.85[CEU][hapmap];0.90[TSI][hapmap]
rs13100471	0.85[CEU][hapmap]
rs5026385	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6762670	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6765380	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6769484	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7616174	0.85[CEU][hapmap];0.90[TSI][hapmap]
rs7620524	0.85[CEU][hapmap];0.88[TSI][hapmap]
rs7638025	0.85[CEU][hapmap]
rs878117	0.85[CEU][hapmap]
rs919154	0.85[CEU][hapmap]
rs9816809	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9876562	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9917645	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432488	chr3:140752302-140790302	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11915229	S100A12	trans	brain	seeQTL
rs11915229	S100A8	trans	brain	seeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140758400-140758800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr3:140758400-140758800	Enhancers	Brain Germinal Matrix	brain
3	chr3:140758600-140759200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr3:140758600-140759200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr3:140758600-140759200	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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