Variant report

Variant	rs9889869
Chromosome Location	chr17:20790189-20790190
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12942716	1.00[YRI][hapmap]
rs13341746	1.00[YRI][hapmap]
rs8076258	1.00[MEX][hapmap]
rs9891405	1.00[YRI][hapmap]
rs9893707	1.00[YRI][hapmap]
rs9898900	1.00[YRI][hapmap]
rs9899697	1.00[YRI][hapmap]
rs9899835	1.00[YRI][hapmap]
rs9899981	1.00[YRI][hapmap]
rs9900003	1.00[MKK][hapmap]
rs9901830	1.00[YRI][hapmap]
rs9903207	1.00[MKK][hapmap];1.00[YRI][hapmap]
rs9903558	1.00[YRI][hapmap]
rs9904417	1.00[YRI][hapmap]
rs9905050	1.00[YRI][hapmap]
rs9906676	1.00[YRI][hapmap]
rs9907052	1.00[YRI][hapmap]
rs9907445	1.00[YRI][hapmap]
rs9908989	1.00[YRI][hapmap]
rs9909422	1.00[YRI][hapmap]
rs9909789	1.00[YRI][hapmap]
rs9910423	1.00[YRI][hapmap]
rs9910786	1.00[YRI][hapmap]
rs9913886	1.00[YRI][hapmap]
rs9914548	1.00[YRI][hapmap]
rs9915406	1.00[YRI][hapmap]
rs9915978	1.00[YRI][hapmap]
rs9916198	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916440	chr17:20171468-20839266	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv2751619	chr17:20462908-20914156	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv3361931	chr17:20539962-20845258	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	esv3330516	chr17:20572433-20862663	Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv960439	chr17:20733458-20799926	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:20780800-20791000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr17:20780800-20801600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr17:20782600-20801200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr17:20784600-20792600	Weak transcription	HepG2	liver
5	chr17:20784600-20799000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr17:20784600-20799600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr17:20788600-20791000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr17:20789400-20801800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr17:20789600-20798400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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