Variant report

Variant	rs9899697
Chromosome Location	chr17:20659632-20659633
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11204311	0.83[ASN][1000 genomes]
rs11653345	0.83[ASN][1000 genomes]
rs11657793	0.83[ASN][1000 genomes]
rs12451977	0.85[ASN][1000 genomes]
rs12601120	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12937276	0.83[ASN][1000 genomes]
rs12938033	0.82[ASN][1000 genomes]
rs12942716	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs12943847	0.83[ASN][1000 genomes]
rs12949613	0.81[ASN][1000 genomes]
rs12950410	0.83[ASN][1000 genomes]
rs13341746	1.00[YRI][hapmap]
rs2310984	0.88[CHB][hapmap]
rs2310985	0.94[CHB][hapmap];0.83[ASN][1000 genomes]
rs6587085	0.83[ASN][1000 genomes]
rs7208923	0.83[ASN][1000 genomes]
rs7222571	0.94[CHB][hapmap];0.89[CHD][hapmap];0.81[ASN][1000 genomes]
rs8072835	0.83[ASN][1000 genomes]
rs8075758	0.83[ASN][1000 genomes]
rs8075922	0.83[ASN][1000 genomes]
rs8079738	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs9889869	1.00[YRI][hapmap]
rs9891405	1.00[YRI][hapmap]
rs9892125	0.89[ASN][1000 genomes]
rs9893707	1.00[YRI][hapmap]
rs9898900	1.00[YRI][hapmap]
rs9899835	1.00[YRI][hapmap]
rs9899961	0.82[ASN][1000 genomes]
rs9899981	1.00[YRI][hapmap]
rs9901771	0.83[ASN][1000 genomes]
rs9903207	1.00[YRI][hapmap]
rs9903558	1.00[YRI][hapmap]
rs9905050	1.00[YRI][hapmap]
rs9906676	1.00[YRI][hapmap]
rs9907052	1.00[YRI][hapmap]
rs9908989	1.00[YRI][hapmap]
rs9909422	1.00[YRI][hapmap]
rs9909789	1.00[YRI][hapmap]
rs9910423	1.00[YRI][hapmap]
rs9910786	1.00[YRI][hapmap]
rs9913886	1.00[YRI][hapmap]
rs9914548	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv574581	chr17:20088492-20699545	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
2	nsv916440	chr17:20171468-20839266	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	esv2758445	chr17:20287295-20699840	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
4	esv2758680	chr17:20287295-20699840	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
5	esv2751619	chr17:20462908-20914156	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
6	esv3361931	chr17:20539962-20845258	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv469647	chr17:20552253-20751738	Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv482489	chr17:20552253-20751738	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	esv3330516	chr17:20572433-20862663	Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
10	nsv960076	chr17:20610812-20689633	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv907884	chr17:20613642-20715726	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9899697	CYTSB	cis	cerebellum	SCAN
rs9899697	KCTD11	trans	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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