Variant report

Variant	rs9910786
Chromosome Location	chr17:20780510-20780511
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:20774798..20778610-chr17:20778817..20781618,3	K562	blood:
2	chr17:20778622..20781617-chr17:20784685..20786554,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12942716	1.00[YRI][hapmap]
rs13341746	1.00[YRI][hapmap]
rs9889869	1.00[YRI][hapmap]
rs9891405	1.00[YRI][hapmap]
rs9893707	1.00[YRI][hapmap]
rs9898900	1.00[YRI][hapmap]
rs9899697	1.00[YRI][hapmap]
rs9899835	1.00[YRI][hapmap]
rs9899981	1.00[YRI][hapmap]
rs9901830	1.00[YRI][hapmap]
rs9903207	1.00[YRI][hapmap]
rs9903558	1.00[YRI][hapmap]
rs9904417	1.00[YRI][hapmap]
rs9905050	1.00[YRI][hapmap]
rs9906676	1.00[YRI][hapmap]
rs9907052	1.00[YRI][hapmap]
rs9907445	1.00[YRI][hapmap]
rs9908989	1.00[YRI][hapmap]
rs9909422	1.00[YRI][hapmap]
rs9909789	1.00[YRI][hapmap]
rs9910423	1.00[YRI][hapmap]
rs9913886	1.00[YRI][hapmap]
rs9914548	1.00[YRI][hapmap]
rs9915406	1.00[YRI][hapmap]
rs9915978	1.00[YRI][hapmap]
rs9916198	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916440	chr17:20171468-20839266	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv2751619	chr17:20462908-20914156	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv3361931	chr17:20539962-20845258	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	esv3330516	chr17:20572433-20862663	Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv1066490	chr17:20732646-20786993	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv960439	chr17:20733458-20799926	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv1057238	chr17:20734623-20786993	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
8	nsv1057410	chr17:20736492-20782474	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
9	nsv1064007	chr17:20736492-20785902	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
10	nsv1067482	chr17:20737431-20782474	Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:20779600-20780800	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr17:20780200-20780800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr17:20780400-20780600	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr17:20780400-20780600	ZNF genes & repeats	Pancreas	Pancrea
5	chr17:20780400-20780600	Enhancers	HepG2	liver
6	chr17:20780400-20780800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
7	chr17:20780400-20780800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr17:20780400-20780800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
9	chr17:20780400-20780800	Enhancers	K562	blood

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