Variant report

Variant	rs9916991
Chromosome Location	chr19:57092074-57092075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10405563	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3752179	0.98[ASN][1000 genomes]
rs4801175	0.85[ASN][1000 genomes]
rs4801338	0.85[ASN][1000 genomes]
rs9917082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949121	chr19:56754719-57591038	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv1062341	chr19:56794070-57273332	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv544094	chr19:56794070-57273332	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
4	nsv1056713	chr19:56799151-57265682	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
5	nsv544095	chr19:56799151-57265682	Strong transcription ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
6	nsv1057240	chr19:56919831-57153659	Flanking Active TSS Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv544097	chr19:56919831-57153659	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
8	nsv1055357	chr19:56933632-57190007	ZNF genes & repeats Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
9	nsv912518	chr19:56995737-57109821	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
10	nsv1062806	chr19:57050734-57191914	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:57079200-57093400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr19:57079400-57092800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr19:57079600-57094200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr19:57079600-57094400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
5	chr19:57079600-57095600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
6	chr19:57079800-57092400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
7	chr19:57079800-57093600	ZNF genes & repeats	Primary T cells from cord blood	blood
8	chr19:57079800-57094400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr19:57079800-57094600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr19:57079800-57095400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
11	chr19:57079800-57096000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr19:57079800-57096200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr19:57079800-57096200	ZNF genes & repeats	Adipose Nuclei	Adipose
14	chr19:57079800-57100000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
15	chr19:57079800-57101800	ZNF genes & repeats	Liver	Liver
16	chr19:57080000-57092200	ZNF genes & repeats	Colon Smooth Muscle	Colon
17	chr19:57080000-57094600	ZNF genes & repeats	Brain Anterior Caudate	brain
18	chr19:57080000-57094800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr19:57080400-57094600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
20	chr19:57080800-57095200	ZNF genes & repeats	Fetal Brain Female	brain
21	chr19:57082200-57092200	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
22	chr19:57083800-57094800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
23	chr19:57084200-57093400	ZNF genes & repeats	Brain Germinal Matrix	brain
24	chr19:57084200-57094600	ZNF genes & repeats	Brain Substantia Nigra	brain
25	chr19:57084600-57094400	ZNF genes & repeats	Brain Cingulate Gyrus	brain
26	chr19:57087600-57094600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
27	chr19:57087600-57095200	ZNF genes & repeats	Brain Hippocampus Middle	brain
28	chr19:57087800-57092200	ZNF genes & repeats	Brain Angular Gyrus	brain
29	chr19:57091400-57092200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr19:57091400-57092200	ZNF genes & repeats	Left Ventricle	heart
31	chr19:57091600-57092200	ZNF genes & repeats	Aorta	Aorta
32	chr19:57091600-57092200	ZNF genes & repeats	Ovary	ovary
33	chr19:57091600-57094600	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links