Variant report

Variant	rs995584
Chromosome Location	chr8:102963939-102963940
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102962220..102965119-chr8:102979593..102981661,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10097554	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2119225	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2119226	1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs2387332	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4734601	0.90[ASN][1000 genomes]
rs479316	0.85[CEU][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs484507	0.90[ASN][1000 genomes]
rs516608	0.82[JPT][hapmap]
rs573618	0.90[ASN][1000 genomes]
rs6982161	0.80[CEU][hapmap]
rs7003289	0.88[CEU][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs718262	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs718263	0.96[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7820497	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9297315	0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs9297316	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs993639	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv831411	chr8:102937991-103108140	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102944400-102964000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr8:102953600-102964800	Weak transcription	Ovary	ovary
3	chr8:102957600-102970200	Weak transcription	Esophagus	oesophagus
4	chr8:102959000-102965400	Weak transcription	Colon Smooth Muscle	Colon
5	chr8:102960000-102964400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr8:102960800-102966400	Weak transcription	Primary T cells from cord blood	blood
7	chr8:102961000-102971200	Weak transcription	Aorta	Aorta
8	chr8:102961400-102965600	Enhancers	Fetal Heart	heart
9	chr8:102962200-102965000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr8:102962400-102965000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:102962800-102966200	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr8:102963000-102964000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr8:102963000-102964400	Weak transcription	Left Ventricle	heart
14	chr8:102963000-102964600	Weak transcription	Fetal Muscle Leg	muscle
15	chr8:102963000-102964800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr8:102963000-102968000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr8:102963000-102969600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr8:102963000-102969800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr8:102963200-102965000	Weak transcription	NHDF-Ad	bronchial
20	chr8:102963200-102965400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr8:102963200-102968200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr8:102963200-102969800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr8:102963200-102973600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr8:102963400-102964600	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr8:102963400-102964600	Weak transcription	Spleen	Spleen
26	chr8:102963600-102964200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr8:102963600-102964800	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr8:102963600-102966000	Enhancers	Right Atrium	heart
29	chr8:102963800-102964200	Weak transcription	Lung	lung

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