Variant report

Variant	rs10097554
Chromosome Location	chr8:102968757-102968758
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:102958971..102963759-chr8:102964426..102969369,7	MCF-7	breast:
2	chr8:102968711..102970531-chr8:102970861..102973050,2	MCF-7	breast:
3	chr8:102968258..102970175-chr8:102971587..102974473,2	MCF-7	breast:
4	chr8:102968161..102969952-chr8:102981485..102983246,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10099842	0.92[CEU][hapmap]
rs1119377	0.84[CEU][hapmap]
rs11778653	0.81[CEU][hapmap]
rs12545403	0.81[CEU][hapmap]
rs1371740	0.85[CEU][hapmap]
rs17495818	0.81[CEU][hapmap]
rs2119225	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2119226	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2387332	0.94[ASN][1000 genomes]
rs4145554	0.88[CEU][hapmap]
rs4734601	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4734602	0.81[CEU][hapmap]
rs4734603	0.85[CEU][hapmap]
rs4734606	0.84[CEU][hapmap]
rs479316	0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs484507	0.87[ASN][1000 genomes]
rs573618	0.87[ASN][1000 genomes]
rs6468803	0.81[CEU][hapmap]
rs6468804	0.84[CEU][hapmap]
rs6468805	0.83[CEU][hapmap]
rs6468807	0.84[CEU][hapmap]
rs6982001	0.88[CEU][hapmap]
rs6991019	0.88[CEU][hapmap]
rs6991178	0.81[CEU][hapmap]
rs6995105	0.92[CEU][hapmap]
rs7003289	0.86[JPT][hapmap];0.93[YRI][hapmap];0.87[ASN][1000 genomes]
rs7010848	0.88[CEU][hapmap]
rs7015981	0.81[CEU][hapmap]
rs718262	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs718263	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7820244	0.92[CEU][hapmap]
rs7820497	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7838556	0.81[CEU][hapmap]
rs7839884	0.85[CEU][hapmap]
rs7840045	0.92[CEU][hapmap]
rs9297315	0.87[ASN][1000 genomes]
rs9297316	0.87[ASN][1000 genomes]
rs993639	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs995584	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv831411	chr8:102937991-103108140	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102957600-102970200	Weak transcription	Esophagus	oesophagus
2	chr8:102961000-102971200	Weak transcription	Aorta	Aorta
3	chr8:102963000-102969600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr8:102963000-102969800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:102963200-102969800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:102963200-102973600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:102965200-102970800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr8:102965400-102969600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr8:102965400-102969800	Weak transcription	NHDF-Ad	bronchial
10	chr8:102965400-102971000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:102965400-102989800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr8:102965600-102969600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr8:102965600-102969600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr8:102965600-102969800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr8:102965600-102969800	Weak transcription	Ovary	ovary
16	chr8:102965800-102969600	Weak transcription	Fetal Muscle Leg	muscle
17	chr8:102966000-102969800	Weak transcription	Right Atrium	heart
18	chr8:102966600-102970000	Weak transcription	Left Ventricle	heart
19	chr8:102966800-102969600	Weak transcription	Fetal Heart	heart
20	chr8:102966800-102971000	Weak transcription	Right Ventricle	heart
21	chr8:102967400-102972200	Weak transcription	GM12878-XiMat	blood
22	chr8:102968000-102968800	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr8:102968200-102968800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr8:102968400-102968800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr8:102968400-102968800	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr8:102968400-102969000	Enhancers	Psoas Muscle	Psoas
27	chr8:102968400-102969200	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr8:102968600-102969000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
29	chr8:102968600-102969200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr8:102968600-102970400	Enhancers	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links