Variant report

Variant	rs7015981
Chromosome Location	chr8:102980496-102980497
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:102975291..102976986-chr8:102979593..102982495,2	MCF-7	breast:
2	chr8:102979732..102981930-chr8:102982441..102985992,3	K562	blood:
3	chr8:102974756..102976372-chr8:102978435..102981394,2	K562	blood:
4	chr8:102962220..102965119-chr8:102979593..102981661,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10097554	0.81[CEU][hapmap]
rs10098273	0.93[EUR][1000 genomes]
rs10099842	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1119377	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs11778653	1.00[CEU][hapmap];0.86[JPT][hapmap];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12545403	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1371739	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1371740	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1543771	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs17495818	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1866690	0.90[EUR][1000 genomes]
rs1866691	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs1866692	0.91[EUR][1000 genomes]
rs1866693	0.90[EUR][1000 genomes]
rs2119226	0.92[CEU][hapmap]
rs4145554	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4734042	0.82[CEU][hapmap]
rs4734043	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs4734044	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs4734045	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs4734046	0.91[EUR][1000 genomes]
rs4734047	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs4734048	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs4734602	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs4734603	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs4734604	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4734606	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6468803	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6468804	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6468805	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs6468806	0.91[EUR][1000 genomes]
rs6468807	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs6981347	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs6982001	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs6991019	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6991178	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6995105	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6999047	0.91[EUR][1000 genomes]
rs6999316	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs7003320	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7010848	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7820244	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7823856	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs7838556	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7838767	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7839884	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7840045	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7841927	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv831411	chr8:102937991-103108140	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102965400-102989800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr8:102970400-102980800	Weak transcription	Psoas Muscle	Psoas
3	chr8:102976000-102992000	Weak transcription	Right Ventricle	heart
4	chr8:102979400-102980800	Enhancers	Fetal Heart	heart
5	chr8:102979400-102981400	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr8:102979400-102985600	Enhancers	Fetal Muscle Leg	muscle
7	chr8:102979600-102981000	Enhancers	Ovary	ovary
8	chr8:102980000-102981000	Weak transcription	Aorta	Aorta
9	chr8:102980000-102981400	Enhancers	Fetal Brain Male	brain
10	chr8:102980000-102981600	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr8:102980000-102987200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr8:102980200-102981200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr8:102980200-102983200	Weak transcription	Left Ventricle	heart
14	chr8:102980200-102983200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr8:102980200-102988200	Weak transcription	Spleen	Spleen
16	chr8:102980400-102980800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr8:102980400-102980800	Weak transcription	Esophagus	oesophagus
18	chr8:102980400-102982200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:102980400-102982400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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