Variant report

Variant	rs4734042
Chromosome Location	chr8:102946289-102946290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102944466..102946820-chr8:102951965..102953968,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10098273	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10099842	0.82[CEU][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes]
rs10955277	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1119377	0.82[CEU][hapmap];0.84[CHB][hapmap]
rs11778653	0.83[CEU][hapmap]
rs12545403	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13278642	0.96[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17495818	0.83[CEU][hapmap];0.82[JPT][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4145554	0.85[CEU][hapmap];0.83[AMR][1000 genomes]
rs4734602	0.83[CEU][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4734603	0.82[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4734604	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4734606	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs6468803	0.83[CEU][hapmap]
rs6468805	0.81[CEU][hapmap]
rs6468807	0.82[CEU][hapmap]
rs6991019	0.85[CEU][hapmap]
rs6991178	0.85[CEU][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6995105	0.82[CEU][hapmap]
rs7003320	0.82[JPT][hapmap]
rs7010848	0.85[CEU][hapmap]
rs7015981	0.82[CEU][hapmap]
rs7820244	0.82[CEU][hapmap]
rs7838556	0.83[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7838767	0.82[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7839884	0.86[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7840045	0.82[CEU][hapmap]
rs9297315	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv831411	chr8:102937991-103108140	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102920600-102956600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:102942800-102947200	Enhancers	Fetal Heart	heart
3	chr8:102943400-102948200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:102943400-102948200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:102944400-102953600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr8:102944400-102964000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr8:102944600-102947800	Weak transcription	Psoas Muscle	Psoas
8	chr8:102944600-102952000	Weak transcription	Ovary	ovary
9	chr8:102945000-102952600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr8:102946000-102946600	Enhancers	Left Ventricle	heart
11	chr8:102946000-102948200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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