Variant report

Variant	rs7838556
Chromosome Location	chr8:102961775-102961776
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102958971..102963759-chr8:102964426..102969369,7	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10097554	0.81[CEU][hapmap]
rs10098273	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10099842	0.96[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10955277	0.83[AMR][1000 genomes]
rs1119377	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs11778653	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs12545403	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13278642	0.86[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1371739	0.93[EUR][1000 genomes]
rs1371740	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs1543771	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs17495818	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1866690	0.91[EUR][1000 genomes]
rs1866691	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs1866692	0.91[EUR][1000 genomes]
rs1866693	0.92[EUR][1000 genomes]
rs2119226	0.92[CEU][hapmap]
rs4145554	1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4734042	0.83[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4734043	0.96[CEU][hapmap];0.81[CHB][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4734044	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs4734045	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs4734046	0.92[EUR][1000 genomes]
rs4734047	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs4734048	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs4734602	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4734603	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734604	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4734606	0.96[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6468803	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs6468804	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs6468805	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs6468806	0.92[EUR][1000 genomes]
rs6468807	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs6981347	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs6982001	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs6991019	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs6991178	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6995105	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs6999047	0.92[EUR][1000 genomes]
rs6999316	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs7003320	0.96[CEU][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes]
rs7010848	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs7015981	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7820244	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs7823856	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs7838767	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7839884	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7840045	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs7841927	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv831411	chr8:102937991-103108140	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102944400-102964000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr8:102948600-102962600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:102953600-102964800	Weak transcription	Ovary	ovary
4	chr8:102954600-102962800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:102957000-102962200	Weak transcription	Left Ventricle	heart
6	chr8:102957600-102970200	Weak transcription	Esophagus	oesophagus
7	chr8:102959000-102965400	Weak transcription	Colon Smooth Muscle	Colon
8	chr8:102959400-102963600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr8:102959600-102962400	Enhancers	K562	blood
10	chr8:102960000-102962200	Weak transcription	Fetal Muscle Leg	muscle
11	chr8:102960000-102964400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr8:102960800-102966400	Weak transcription	Primary T cells from cord blood	blood
13	chr8:102961000-102971200	Weak transcription	Aorta	Aorta
14	chr8:102961200-102962400	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr8:102961400-102962200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr8:102961400-102962200	Enhancers	NHDF-Ad	bronchial
17	chr8:102961400-102963200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:102961400-102963200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr8:102961400-102965600	Enhancers	Fetal Heart	heart
20	chr8:102961600-102962200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr8:102961600-102962200	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr8:102961600-102962400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr8:102961600-102962600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr8:102961600-102962600	Enhancers	HSMM	muscle
25	chr8:102961600-102962600	Enhancers	HSMMtube	muscle
26	chr8:102961600-102962800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr8:102961600-102962800	Enhancers	NHEK	skin
28	chr8:102961600-102963000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr8:102961600-102963000	Enhancers	Muscle Satellite Cultured Cells	--
30	chr8:102961600-102963000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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