Variant report

Variant	rs6468804
Chromosome Location	chr8:102972616-102972617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:102971042..102973753-chr8:102975673..102978359,2	MCF-7	breast:
2	chr8:102968258..102970175-chr8:102971587..102974473,2	MCF-7	breast:
3	chr8:102968711..102970531-chr8:102970861..102973050,2	MCF-7	breast:
4	chr8:102970883..102973070-chr8:102973117..102975450,3	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10097554	0.84[CEU][hapmap]
rs10098273	0.89[EUR][1000 genomes]
rs10099842	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1119377	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs11778653	0.96[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12545403	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs13278642	0.82[CEU][hapmap]
rs1371739	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1371740	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1543771	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs17495818	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs1866690	0.85[EUR][1000 genomes]
rs1866691	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs1866692	0.86[EUR][1000 genomes]
rs1866693	0.85[EUR][1000 genomes]
rs2119225	0.90[YRI][hapmap]
rs2119226	0.88[CEU][hapmap]
rs4145554	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs4734043	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs4734044	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs4734045	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs4734046	0.86[EUR][1000 genomes]
rs4734047	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs4734048	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs4734602	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs4734603	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs4734604	0.97[EUR][1000 genomes]
rs4734606	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs6468803	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6468805	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs6468806	0.86[EUR][1000 genomes]
rs6468807	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs6981347	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs6982001	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs6991019	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6991178	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs6995105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6999047	0.86[EUR][1000 genomes]
rs6999316	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs7003320	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs7010848	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7015981	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs718262	0.84[CEU][hapmap]
rs718263	0.81[CEU][hapmap]
rs7820244	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7820497	0.85[CEU][hapmap]
rs7823856	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs7838556	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs7838767	0.90[EUR][1000 genomes]
rs7839884	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs7840045	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7841927	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv831411	chr8:102937991-103108140	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv972563	chr8:102970051-102975959	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2761453	chr8:102970136-102974682	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102963200-102973600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:102965400-102989800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr8:102968800-102974200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr8:102969200-102979600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr8:102970000-102974400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr8:102970200-102973800	Weak transcription	Ovary	ovary
7	chr8:102970200-102973800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr8:102970200-102973800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr8:102970400-102979600	Weak transcription	Left Ventricle	heart
10	chr8:102970400-102980800	Weak transcription	Psoas Muscle	Psoas
11	chr8:102970800-102979800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr8:102971800-102973800	Weak transcription	Aorta	Aorta
13	chr8:102971800-102979200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:102972200-102975800	Enhancers	GM12878-XiMat	blood
15	chr8:102972600-102979400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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