Variant report

Variant	rs12545403
Chromosome Location	chr8:102950360-102950361
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102948704..102951699-chr8:102951896..102954688,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10097554	0.81[CEU][hapmap]
rs10098273	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10099842	0.96[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10955277	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1119377	0.96[CEU][hapmap];0.89[CHB][hapmap];0.92[EUR][1000 genomes]
rs11778653	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs13278642	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1371739	0.93[EUR][1000 genomes]
rs1371740	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs1543771	0.96[CEU][hapmap];0.84[CHB][hapmap];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17495818	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1866690	0.91[EUR][1000 genomes]
rs1866691	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs1866692	0.91[EUR][1000 genomes]
rs1866693	0.92[EUR][1000 genomes]
rs2119226	0.92[CEU][hapmap]
rs4145554	1.00[CEU][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4734042	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4734043	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs4734044	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs4734045	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs4734046	0.92[EUR][1000 genomes]
rs4734047	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs4734048	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs4734602	0.92[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4734603	0.96[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4734604	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4734606	0.96[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6468803	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs6468804	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs6468805	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs6468806	0.92[EUR][1000 genomes]
rs6468807	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs6981347	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs6982001	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs6991019	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs6991178	1.00[CEU][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6995105	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs6999047	0.92[EUR][1000 genomes]
rs6999316	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs7003320	0.96[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs7010848	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs7015981	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs718263	0.81[CEU][hapmap]
rs7820244	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs7823856	0.96[CEU][hapmap];0.84[CHB][hapmap];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7838556	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7838767	0.90[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7839884	0.96[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7840045	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs7841927	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv831411	chr8:102937991-103108140	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102920600-102956600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:102944400-102953600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr8:102944400-102964000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr8:102944600-102952000	Weak transcription	Ovary	ovary
5	chr8:102945000-102952600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:102948600-102955200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:102948600-102962600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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