Variant report

Variant	rs4734606
Chromosome Location	chr8:102981053-102981054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:102975291..102976986-chr8:102979593..102982495,2	MCF-7	breast:
2	chr8:102979732..102981930-chr8:102982441..102985992,3	K562	blood:
3	chr8:102974756..102976372-chr8:102978435..102981394,2	K562	blood:
4	chr8:102962220..102965119-chr8:102979593..102981661,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10097554	0.84[CEU][hapmap]
rs10098273	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10099842	0.92[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];0.85[JPT][hapmap];0.96[MEX][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1119377	0.82[ASW][hapmap];1.00[CEU][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11778653	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs12545403	0.96[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13278642	0.81[CHB][hapmap]
rs1371739	0.90[EUR][1000 genomes]
rs1371740	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs1543771	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17495818	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1866690	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1866691	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1866692	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1866693	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2119226	0.89[CEU][hapmap]
rs4145554	0.96[CEU][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];0.85[JPT][hapmap];0.96[MEX][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4734042	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs4734043	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4734044	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4734045	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4734046	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4734047	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4734048	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4734602	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4734603	0.92[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4734604	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6468803	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs6468804	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs6468805	0.82[ASW][hapmap];1.00[CEU][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6468806	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6468807	0.82[ASW][hapmap];1.00[CEU][hapmap];0.93[GIH][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6981347	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6982001	0.88[ASW][hapmap];0.96[CEU][hapmap];0.95[GIH][hapmap];0.96[MEX][hapmap];0.81[MKK][hapmap];0.92[TSI][hapmap];0.92[YRI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6991019	0.96[CEU][hapmap];0.89[GIH][hapmap];0.92[TSI][hapmap];0.92[EUR][1000 genomes]
rs6991178	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6995105	0.92[CEU][hapmap];0.98[GIH][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes]
rs6999047	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6999316	1.00[CEU][hapmap];0.92[YRI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7003320	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7010848	0.96[CEU][hapmap];0.98[GIH][hapmap];0.94[TSI][hapmap];0.93[EUR][1000 genomes]
rs7015981	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7820244	0.92[CEU][hapmap];0.98[GIH][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes]
rs7823856	1.00[CEU][hapmap];0.92[YRI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7838556	0.96[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7838767	0.85[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7839884	0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7840045	0.92[CEU][hapmap];0.93[GIH][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes]
rs7841927	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9297317	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv831411	chr8:102937991-103108140	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4734606	RRM2B	cis	parietal	SCAN
rs4734606	STK3	cis	cerebellum	SCAN
rs4734606	NCALD	cis	cerebellum	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102965400-102989800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr8:102976000-102992000	Weak transcription	Right Ventricle	heart
3	chr8:102979400-102981400	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr8:102979400-102985600	Enhancers	Fetal Muscle Leg	muscle
5	chr8:102980000-102981400	Enhancers	Fetal Brain Male	brain
6	chr8:102980000-102981600	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr8:102980000-102987200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr8:102980200-102981200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr8:102980200-102983200	Weak transcription	Left Ventricle	heart
10	chr8:102980200-102983200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr8:102980200-102988200	Weak transcription	Spleen	Spleen
12	chr8:102980400-102982200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:102980400-102982400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:102980800-102981400	Enhancers	Psoas Muscle	Psoas
15	chr8:102980800-102985400	Weak transcription	Fetal Heart	heart
16	chr8:102981000-102981400	Enhancers	Aorta	Aorta
17	chr8:102981000-102984200	Weak transcription	Ovary	ovary
18	chr8:102981000-102987400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr8:102981000-102992000	Weak transcription	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links