Variant report

Variant	rs2119225
Chromosome Location	chr8:102959111-102959112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10097554	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1371740	0.90[YRI][hapmap]
rs2119226	0.80[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.98[ASN][1000 genomes]
rs2387332	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4734601	0.89[ASN][1000 genomes]
rs479316	0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs484507	0.91[ASN][1000 genomes]
rs516608	0.82[JPT][hapmap]
rs573618	0.91[ASN][1000 genomes]
rs6468804	0.90[YRI][hapmap]
rs6982161	0.80[CEU][hapmap]
rs7003289	0.84[CEU][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs718262	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs718263	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7820497	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9297315	0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs9297316	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs993639	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs995584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv831411	chr8:102937991-103108140	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102944400-102964000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr8:102948600-102962600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:102951000-102961400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:102953600-102964800	Weak transcription	Ovary	ovary
5	chr8:102953800-102959400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr8:102954600-102962800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr8:102957000-102962200	Weak transcription	Left Ventricle	heart
8	chr8:102957600-102959200	Weak transcription	Fetal Muscle Leg	muscle
9	chr8:102957600-102970200	Weak transcription	Esophagus	oesophagus
10	chr8:102958000-102961400	Weak transcription	Fetal Heart	heart
11	chr8:102958600-102959400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr8:102959000-102965400	Weak transcription	Colon Smooth Muscle	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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