Variant report

Variant	rs9956830
Chromosome Location	chr18:39108451-39108452
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10164145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10468954	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs13381786	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13381861	1.00[ASN][1000 genomes]
rs16974789	1.00[ASN][1000 genomes]
rs16974806	1.00[ASN][1000 genomes]
rs16974814	1.00[ASN][1000 genomes]
rs28547023	1.00[ASN][1000 genomes]
rs55946383	1.00[ASN][1000 genomes]
rs56102459	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57557970	1.00[ASN][1000 genomes]
rs58688175	1.00[ASN][1000 genomes]
rs73953332	1.00[ASN][1000 genomes]
rs73953333	1.00[ASN][1000 genomes]
rs73953334	1.00[ASN][1000 genomes]
rs73953336	1.00[ASN][1000 genomes]
rs9944619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9958082	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909564	chr18:38739067-39179256	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1066869	chr18:38742896-39680723	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv543685	chr18:38742896-39680723	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39108200-39108800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr18:39108400-39108600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr18:39108400-39109400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr18:39108400-39113600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links