Variant report
| Variant | rs16974789 |
|---|---|
| Chromosome Location | chr18:39081289-39081290 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10048345 | 0.81[AFR][1000 genomes] |
| rs10163863 | 0.81[AFR][1000 genomes] |
| rs10163951 | 1.00[ASW][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs10164145 | 1.00[ASN][1000 genomes] |
| rs10164168 | 0.81[AFR][1000 genomes] |
| rs13381786 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13381861 | 1.00[ASN][1000 genomes] |
| rs16974747 | 1.00[YRI][hapmap] |
| rs16974806 | 1.00[ASN][1000 genomes] |
| rs16974814 | 1.00[ASN][1000 genomes] |
| rs16974835 | 0.81[AFR][1000 genomes] |
| rs28547023 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55946383 | 0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56102459 | 1.00[ASN][1000 genomes] |
| rs57557970 | 0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58688175 | 0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73953332 | 1.00[ASN][1000 genomes] |
| rs73953333 | 1.00[ASN][1000 genomes] |
| rs73953334 | 0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73953336 | 0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9944619 | 1.00[ASN][1000 genomes] |
| rs9956830 | 1.00[ASN][1000 genomes] |
| rs9958082 | 0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv909564 | chr18:38739067-39179256 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1066869 | chr18:38742896-39680723 | Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv543685 | chr18:38742896-39680723 | Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:39081200-39082200 | Weak transcription | Stomach Mucosa | stomach |
