Variant report

Variant	rs10163951
Chromosome Location	chr18:39105549-39105550
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10048345	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10083938	0.89[AFR][1000 genomes]
rs10084019	1.00[AMR][1000 genomes]
rs10163863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10164168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10468955	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10502768	1.00[AMR][1000 genomes]
rs12327187	1.00[AMR][1000 genomes]
rs13381786	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs1545056	1.00[AMR][1000 genomes]
rs16974747	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16974789	0.81[AFR][1000 genomes]
rs16974835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16974997	1.00[AMR][1000 genomes]
rs16975126	1.00[AMR][1000 genomes]
rs55946383	0.85[AFR][1000 genomes]
rs57557970	0.85[AFR][1000 genomes]
rs58356161	1.00[AMR][1000 genomes]
rs58688175	0.81[AFR][1000 genomes]
rs73950952	1.00[AMR][1000 genomes]
rs73953311	1.00[AMR][1000 genomes]
rs73953334	0.81[AFR][1000 genomes]
rs73953336	0.85[AFR][1000 genomes]
rs9807141	1.00[AMR][1000 genomes]
rs9807239	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9807489	1.00[AMR][1000 genomes]
rs9963615	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909564	chr18:38739067-39179256	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1066869	chr18:38742896-39680723	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv543685	chr18:38742896-39680723	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39090400-39108400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr18:39092400-39106400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr18:39105200-39105600	Enhancers	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links