Variant report

Variant	rs1545056
Chromosome Location	chr18:39226770-39226771
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10048345	1.00[AMR][1000 genomes]
rs10084019	1.00[AMR][1000 genomes]
rs10163863	1.00[AMR][1000 genomes]
rs10163951	1.00[AMR][1000 genomes]
rs10164168	1.00[AMR][1000 genomes]
rs10468955	1.00[AMR][1000 genomes]
rs10502768	1.00[AMR][1000 genomes]
rs12327187	1.00[AMR][1000 genomes]
rs16974747	1.00[AMR][1000 genomes]
rs16974835	1.00[AMR][1000 genomes]
rs16974997	1.00[AMR][1000 genomes]
rs16975126	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16975325	1.00[AMR][1000 genomes]
rs58356161	1.00[AMR][1000 genomes]
rs73950952	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73953311	1.00[AMR][1000 genomes]
rs9807141	1.00[AMR][1000 genomes]
rs9807239	1.00[AMR][1000 genomes]
rs9807489	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066869	chr18:38742896-39680723	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv543685	chr18:38742896-39680723	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39226200-39227400	Enhancers	HepG2	liver
2	chr18:39226200-39227600	Enhancers	Liver	Liver
3	chr18:39226400-39227200	Enhancers	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links