Variant report

Variant	rs9807239
Chromosome Location	chr18:39050904-39050905
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10048345	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10084019	1.00[AMR][1000 genomes]
rs10163863	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10163951	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10164168	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10468955	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10502768	1.00[AMR][1000 genomes]
rs1545056	1.00[AMR][1000 genomes]
rs16974747	1.00[AMR][1000 genomes]
rs16974835	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16974997	1.00[AMR][1000 genomes]
rs16975126	1.00[AMR][1000 genomes]
rs28605118	1.00[AMR][1000 genomes]
rs58356161	1.00[AMR][1000 genomes]
rs73950952	1.00[AMR][1000 genomes]
rs73953311	1.00[AMR][1000 genomes]
rs9963615	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909564	chr18:38739067-39179256	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1066869	chr18:38742896-39680723	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv543685	chr18:38742896-39680723	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39042000-39060600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr18:39045600-39052600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr18:39046800-39063000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr18:39050600-39051000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr18:39050600-39051000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr18:39050800-39051200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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