Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10083938	0.81[AFR][1000 genomes]
rs10084019	1.00[AMR][1000 genomes]
rs10163863	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10163951	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10164168	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10468955	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10502768	1.00[AMR][1000 genomes]
rs13381786	1.00[YRI][hapmap]
rs1545056	1.00[AMR][1000 genomes]
rs16974747	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16974789	0.81[AFR][1000 genomes]
rs16974835	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16974997	1.00[AMR][1000 genomes]
rs16975126	1.00[AMR][1000 genomes]
rs28605118	1.00[AMR][1000 genomes]
rs58356161	1.00[AMR][1000 genomes]
rs58688175	0.81[AFR][1000 genomes]
rs73950952	1.00[AMR][1000 genomes]
rs73953311	1.00[AMR][1000 genomes]
rs73953334	0.81[AFR][1000 genomes]
rs9807239	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9963615	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909564	chr18:38739067-39179256	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1066869	chr18:38742896-39680723	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv543685	chr18:38742896-39680723	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39051200-39072000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr18:39066800-39075400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr18:39067400-39074000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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