Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10048345	0.81[AFR][1000 genomes]
rs10163863	0.81[AFR][1000 genomes]
rs10163951	0.81[AFR][1000 genomes]
rs10164145	1.00[ASN][1000 genomes]
rs10164168	0.81[AFR][1000 genomes]
rs13381786	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13381861	1.00[ASN][1000 genomes]
rs16974789	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16974806	1.00[ASN][1000 genomes]
rs16974814	1.00[ASN][1000 genomes]
rs16974835	0.81[AFR][1000 genomes]
rs28547023	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55946383	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56102459	1.00[ASN][1000 genomes]
rs57557970	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58688175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73953332	1.00[ASN][1000 genomes]
rs73953333	1.00[ASN][1000 genomes]
rs73953336	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9944619	1.00[ASN][1000 genomes]
rs9956830	1.00[ASN][1000 genomes]
rs9958082	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909564	chr18:38739067-39179256	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1066869	chr18:38742896-39680723	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv543685	chr18:38742896-39680723	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39084200-39095000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr18:39090400-39101400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr18:39090400-39108400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr18:39092400-39106400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr18:39093400-39095000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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