Variant report
Variant | rs996167 |
---|---|
Chromosome Location | chr8:51495008-51495009 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10095638 | 0.85[CEU][hapmap] |
rs10099354 | 0.85[CEU][hapmap] |
rs10103289 | 0.82[CEU][hapmap] |
rs10105436 | 1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10108554 | 0.84[CHB][hapmap] |
rs10110737 | 0.84[CHB][hapmap];0.96[YRI][hapmap] |
rs1033001 | 0.85[CEU][hapmap] |
rs1157348 | 0.84[CHB][hapmap] |
rs12334955 | 0.84[CHB][hapmap];0.96[YRI][hapmap] |
rs12549578 | 0.85[CEU][hapmap] |
rs12675489 | 0.83[CHB][hapmap] |
rs1481480 | 0.84[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs1508625 | 0.82[CEU][hapmap] |
rs1532995 | 0.85[CEU][hapmap] |
rs1546450 | 0.85[CEU][hapmap] |
rs1911833 | 0.85[CEU][hapmap] |
rs2016596 | 1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
rs2046355 | 0.83[CHB][hapmap];0.96[YRI][hapmap] |
rs2048210 | 0.85[CEU][hapmap] |
rs4873474 | 0.85[CEU][hapmap] |
rs6473235 | 0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes] |
rs6473238 | 1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap] |
rs6473247 | 0.84[CHB][hapmap] |
rs6473249 | 0.84[CHB][hapmap];0.96[YRI][hapmap] |
rs6473291 | 0.85[CEU][hapmap] |
rs7000881 | 1.00[CEU][hapmap] |
rs7003356 | 0.85[CEU][hapmap] |
rs7842259 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes] |
rs7846000 | 0.85[CEU][hapmap] |
rs922724 | 0.84[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs931167 | 1.00[CEU][hapmap] |
rs996166 | 1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv948436 | chr8:51115028-51917504 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
2 | nsv429914 | chr8:51371447-51617647 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
3 | nsv531502 | chr8:51390997-51703556 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
4 | esv3514165 | chr8:51416583-51923545 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
5 | esv3514166 | chr8:51416583-51923545 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
6 | nsv890873 | chr8:51462163-51612641 | Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:51493200-51499000 | Weak transcription | Brain Germinal Matrix | brain |