Variant report

Variant	rs2046355
Chromosome Location	chr8:51506770-51506771
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10087387	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10087631	0.83[ASN][1000 genomes]
rs10088424	0.92[CHB][hapmap];0.85[JPT][hapmap]
rs10088550	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs10090779	0.95[AMR][1000 genomes]
rs10105436	1.00[ASW][hapmap];0.86[CHB][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs10106921	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs10107280	0.85[CHB][hapmap];0.91[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.84[ASN][1000 genomes]
rs10108554	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10110737	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1157348	1.00[JPT][hapmap]
rs11994238	0.92[CHB][hapmap];0.85[JPT][hapmap]
rs12334955	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12675489	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.86[ASN][1000 genomes]
rs12677318	0.92[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12679674	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs1384828	0.92[CHB][hapmap];0.85[JPT][hapmap]
rs1384830	0.92[CHB][hapmap];0.92[CHD][hapmap];0.85[JPT][hapmap]
rs1481474	0.95[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.89[MEX][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1481480	0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs16915036	1.00[JPT][hapmap]
rs16915079	0.85[CHB][hapmap];0.82[JPT][hapmap];0.95[AMR][1000 genomes]
rs16915100	0.85[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs2016596	0.96[YRI][hapmap]
rs28412668	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28435842	0.86[ASN][1000 genomes]
rs3849806	0.85[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs4617166	0.84[ASN][1000 genomes]
rs4873467	0.83[CHB][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6473235	0.86[CHB][hapmap]
rs6473238	1.00[ASW][hapmap];0.93[LWK][hapmap];0.94[MKK][hapmap];0.89[YRI][hapmap]
rs6473239	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs6473247	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6473249	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6473253	0.92[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.81[MEX][hapmap];0.81[ASN][1000 genomes]
rs6998737	0.83[ASW][hapmap];0.85[CHB][hapmap];0.83[CHD][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.93[AMR][1000 genomes]
rs7002065	0.85[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs7017918	0.85[CHB][hapmap];0.84[JPT][hapmap];0.93[AMR][1000 genomes]
rs7832680	0.82[GIH][hapmap]
rs7842259	0.83[CHB][hapmap]
rs922723	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs922724	0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs9298339	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs996166	1.00[ASW][hapmap];0.86[CHB][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs996167	0.83[CHB][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv429914	chr8:51371447-51617647	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv531502	chr8:51390997-51703556	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3514165	chr8:51416583-51923545	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3514166	chr8:51416583-51923545	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv890873	chr8:51462163-51612641	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links