Variant report

Variant	rs4873467
Chromosome Location	chr8:51520056-51520057
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10086876	0.82[CHB][hapmap]
rs10087387	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10087631	0.93[ASN][1000 genomes]
rs10088424	1.00[JPT][hapmap]
rs10088550	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs10090779	0.99[ASN][1000 genomes]
rs10099354	0.81[CHB][hapmap]
rs10099939	0.82[CHB][hapmap]
rs10106921	0.83[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10107280	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10108554	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs10110737	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs10481271	0.82[CHB][hapmap]
rs1157348	0.82[CHB][hapmap];0.86[JPT][hapmap];0.80[YRI][hapmap]
rs11994238	0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12334955	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs12675489	0.83[CHB][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes]
rs12677318	0.91[CHB][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes]
rs12677948	0.81[CHB][hapmap]
rs12679674	0.84[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12682223	0.88[ASN][1000 genomes]
rs12682636	0.89[CHB][hapmap]
rs1384828	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1384830	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1481474	0.81[CHB][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16915036	0.86[JPT][hapmap]
rs16915079	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs16915097	0.92[ASN][1000 genomes]
rs16915100	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16915275	0.82[CHB][hapmap]
rs16915315	0.82[CHB][hapmap]
rs16915358	0.82[CHB][hapmap]
rs1911832	0.81[CHB][hapmap]
rs2046355	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs28412668	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28435842	0.86[AMR][1000 genomes]
rs3849806	0.84[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41364346	0.81[CHB][hapmap]
rs4146358	0.81[CHB][hapmap]
rs4146359	0.82[CHB][hapmap]
rs4617166	0.89[ASN][1000 genomes]
rs6473239	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs6473247	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs6473249	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs6473253	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6473289	0.81[CHB][hapmap]
rs6473290	0.81[CHB][hapmap]
rs6473320	0.81[CHB][hapmap]
rs6985954	0.81[CHB][hapmap]
rs6988284	0.82[CHB][hapmap]
rs6998678	0.82[CHB][hapmap]
rs6998737	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7002065	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7003138	0.82[CHB][hapmap]
rs7003165	0.82[CHB][hapmap]
rs7009493	0.82[CHB][hapmap]
rs7015560	0.82[CHB][hapmap]
rs7016907	0.82[CHB][hapmap]
rs7017813	0.81[CHB][hapmap]
rs7017918	0.84[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7820529	0.82[CHB][hapmap]
rs7821535	0.81[CHB][hapmap]
rs7824055	0.82[CHB][hapmap]
rs922723	0.81[EUR][1000 genomes]
rs9298339	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs9298378	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv429914	chr8:51371447-51617647	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv531502	chr8:51390997-51703556	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3514165	chr8:51416583-51923545	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3514166	chr8:51416583-51923545	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv890873	chr8:51462163-51612641	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51516200-51520400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:51518200-51529000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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