Variant report

Variant	rs10107280
Chromosome Location	chr8:51469405-51469406
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10087387	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10088424	0.92[CHB][hapmap];0.85[JPT][hapmap]
rs10088550	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10106921	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10108554	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10110737	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1157348	1.00[JPT][hapmap]
rs11994238	0.92[CHB][hapmap];0.85[JPT][hapmap]
rs12334955	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12675489	1.00[ASW][hapmap];0.85[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12677318	0.89[ASW][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12679674	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1384828	0.92[CHB][hapmap];0.85[JPT][hapmap]
rs1384830	0.92[CHB][hapmap];0.83[CHD][hapmap];0.85[JPT][hapmap]
rs1481474	0.95[CHD][hapmap];0.94[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1542615	0.80[CHD][hapmap]
rs16915036	1.00[JPT][hapmap]
rs16915079	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs16915100	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs2046355	0.85[CHB][hapmap];0.91[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap]
rs28435842	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs3849806	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs4873467	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs6473239	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs6473247	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs6473249	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs6473253	0.92[CHB][hapmap];0.91[CHD][hapmap];0.85[JPT][hapmap]
rs6998737	1.00[CHB][hapmap];0.83[CHD][hapmap];0.85[JPT][hapmap];0.89[MEX][hapmap]
rs7002065	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7017918	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs922723	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9298339	0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv429914	chr8:51371447-51617647	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv531502	chr8:51390997-51703556	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3514165	chr8:51416583-51923545	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3514166	chr8:51416583-51923545	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1029576	chr8:51418003-51476385	ZNF genes & repeats Strong transcription Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1022304	chr8:51442784-51475071	ZNF genes & repeats Enhancers Weak transcription Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
8	nsv539608	chr8:51442784-51475071	Weak transcription Strong transcription Enhancers ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
9	nsv1030044	chr8:51442827-51476385	ZNF genes & repeats Weak transcription Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv890873	chr8:51462163-51612641	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51469200-51470200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:51469400-51470400	Strong transcription	Cortex derived primary cultured neurospheres	brain

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