Variant report

Variant	rs9962920
Chromosome Location	chr18:45106151-45106152
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10163590	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10163681	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10163901	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10502884	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12326663	0.95[EUR][1000 genomes]
rs17736304	0.95[EUR][1000 genomes]
rs17736377	0.95[EUR][1000 genomes]
rs17736432	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1876926	0.90[EUR][1000 genomes]
rs28379424	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28415897	0.87[EUR][1000 genomes]
rs28607937	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28634667	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28702728	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28723450	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4297773	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4536534	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4939746	0.89[EUR][1000 genomes]
rs4939766	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4940330	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4940345	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4940346	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57331079	0.88[EUR][1000 genomes]
rs60405448	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7226723	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72922530	0.87[EUR][1000 genomes]
rs72922533	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72922556	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72922557	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73953253	0.81[ASN][1000 genomes]
rs8089178	0.90[EUR][1000 genomes]
rs8092886	0.91[EUR][1000 genomes]
rs9946093	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9949386	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9960019	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9960348	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9960587	0.87[EUR][1000 genomes]
rs9962814	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9963494	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9963568	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45102200-45107000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr18:45104200-45108600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr18:45104400-45108400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr18:45104600-45110600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr18:45104600-45120000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr18:45104800-45108600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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