Variant report

Variant	rs10502884
Chromosome Location	chr18:45104375-45104376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10163590	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10163681	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10163901	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1105471	1.00[ASN][1000 genomes]
rs12326663	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17736304	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17736377	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17736432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17797411	0.81[EUR][1000 genomes]
rs1876926	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.90[TSI][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28379424	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28415897	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28607937	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28634667	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28702728	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28723450	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4297773	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4536534	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4939746	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4939766	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4940330	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4940345	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4940346	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57331079	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60405448	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7226723	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72922530	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72922533	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72922556	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72922557	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73953253	0.93[ASN][1000 genomes]
rs8089178	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8092886	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9946093	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9949386	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9960019	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9960348	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9960587	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9962814	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9962920	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9963494	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9963568	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10502884	KATNAL2	cis	parietal	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45102200-45107000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr18:45103000-45104400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr18:45103000-45104600	Enhancers	H1 Cell Line	embryonic stem cell
4	chr18:45103400-45104600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr18:45103400-45104600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr18:45103400-45104600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr18:45103400-45104800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr18:45103600-45104400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr18:45103600-45104600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr18:45103600-45104600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr18:45103800-45104800	Enhancers	H9 Cell Line	embryonic stem cell
12	chr18:45103800-45104800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr18:45104000-45104400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr18:45104000-45104600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr18:45104200-45104400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr18:45104200-45108600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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