Variant report

Variant	rs8089178
Chromosome Location	chr18:45084397-45084398
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10163590	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10163681	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10163901	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10502884	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1105471	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12326663	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17736304	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17736377	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17736432	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17797411	0.82[EUR][1000 genomes]
rs1876926	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28379424	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28415897	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28505643	0.82[EUR][1000 genomes]
rs28607937	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28634667	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28702728	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28723450	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4297773	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4536534	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4939746	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4939766	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4940330	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4940345	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4940346	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57331079	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60405448	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7226723	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72922530	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72922533	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72922556	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72922557	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73953253	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8092886	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9946093	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9949386	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9960019	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9960348	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9960587	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9962814	0.90[EUR][1000 genomes]
rs9962920	0.90[EUR][1000 genomes]
rs9963494	0.88[EUR][1000 genomes]
rs9963568	0.88[EUR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45081800-45084400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr18:45083600-45085200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr18:45083800-45085200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr18:45083800-45085400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr18:45084000-45085000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr18:45084200-45084600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr18:45084200-45084800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr18:45084200-45084800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr18:45084200-45085000	Enhancers	H9 Cell Line	embryonic stem cell
10	chr18:45084200-45085000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr18:45084200-45085000	Enhancers	Dnd41	blood
12	chr18:45084200-45085200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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