Variant report

Variant	rs9974385
Chromosome Location	chr21:15824495-15824496
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1123271	1.00[JPT][hapmap]
rs1297125	1.00[JPT][hapmap]
rs17002266	1.00[JPT][hapmap]
rs17002643	1.00[JPT][hapmap]
rs17002662	1.00[JPT][hapmap]
rs17240438	1.00[JPT][hapmap]
rs17306192	1.00[JPT][hapmap]
rs2822560	1.00[JPT][hapmap]
rs2822639	1.00[JPT][hapmap]
rs909257	1.00[JPT][hapmap]
rs914115	1.00[JPT][hapmap]
rs9305334	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063703	chr21:15777995-15882121	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv544375	chr21:15777995-15882121	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv966029	chr21:15818808-15833739	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15823000-15825000	Enhancers	GM12878-XiMat	blood
2	chr21:15823600-15826400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr21:15823800-15827400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr21:15823800-15828000	Flanking Active TSS	K562	blood
5	chr21:15824000-15828000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr21:15824000-15828200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr21:15824000-15828600	Enhancers	Primary hematopoietic stem cells	blood
8	chr21:15824200-15828200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr21:15824400-15824800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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