Variant report

Variant	rs9994692
Chromosome Location	chr4:54256167-54256168
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:54241848..54244564-chr4:54254986..54256574,2	MCF-7	breast:
2	chr4:54255367..54256964-chr4:54302756..54305471,2	K562	blood:
3	chr4:54253675..54256529-chr4:54257967..54261148,3	K562	blood:
4	chr4:54242715..54244847-chr4:54254190..54257158,2	K562	blood:

Variant related genes	Relation type
ENSG00000145216	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10000723	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10012328	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10019672	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs13435672	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1481823	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17656576	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17656616	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs17657105	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17705995	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17713298	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7349642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9968448	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54244600-54256200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:54244600-54272800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:54244600-54310600	Weak transcription	Spleen	Spleen
4	chr4:54244600-54319200	Weak transcription	Pancreas	Pancrea
5	chr4:54245000-54271400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr4:54245400-54279400	Weak transcription	Right Ventricle	heart
7	chr4:54245600-54269600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:54245600-54270200	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr4:54246000-54257800	Weak transcription	Fetal Heart	heart
10	chr4:54246000-54270200	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr4:54246000-54270200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr4:54246200-54276200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr4:54246200-54319200	Weak transcription	Aorta	Aorta
14	chr4:54246400-54259800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr4:54246400-54259800	Strong transcription	Primary B cells from peripheral blood	blood
16	chr4:54246600-54259200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr4:54246600-54270200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:54246600-54311200	Weak transcription	Small Intestine	intestine
19	chr4:54247200-54258600	Strong transcription	Fetal Intestine Large	intestine
20	chr4:54247400-54260800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr4:54247400-54270200	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr4:54247600-54259400	Strong transcription	HMEC	breast
23	chr4:54247600-54262200	Strong transcription	K562	blood
24	chr4:54247600-54269800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr4:54247600-54270200	Strong transcription	Dnd41	blood
26	chr4:54248000-54270000	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr4:54248200-54259600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr4:54248200-54259600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr4:54248200-54270000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr4:54248200-54270200	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr4:54248400-54258600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr4:54248400-54258600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr4:54248400-54258800	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr4:54248400-54258800	Strong transcription	NH-A	brain
35	chr4:54248400-54259200	Strong transcription	Duodenum Mucosa	Duodenum
36	chr4:54248400-54259400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr4:54248400-54259400	Strong transcription	Placenta	Placenta
38	chr4:54248400-54259600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr4:54248400-54259600	Strong transcription	Fetal Lung	lung
40	chr4:54248400-54260800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr4:54248400-54269400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr4:54248400-54269600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr4:54248400-54269800	Strong transcription	Fetal Thymus	thymus
44	chr4:54248400-54270000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr4:54248400-54270000	Strong transcription	NHDF-Ad	bronchial
46	chr4:54248400-54270200	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr4:54248400-54270200	Strong transcription	Primary T helper cells fromperipheralblood	blood
48	chr4:54248600-54258400	Strong transcription	H1 Cell Line	embryonic stem cell
49	chr4:54248600-54258600	Strong transcription	Primary hematopoietic stem cells	blood
50	chr4:54248600-54258800	Strong transcription	Osteobl	bone

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