Variant report

Variant	rs7349642
Chromosome Location	chr4:54294042-54294043
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10000723	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10001337	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10012328	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10019672	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13435672	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1481823	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17656576	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17656616	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17657105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17658423	0.91[CEU][hapmap]
rs17705995	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17713298	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1865510	0.91[CEU][hapmap];0.81[JPT][hapmap]
rs2292580	0.92[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap]
rs9968448	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9994692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54244600-54310600	Weak transcription	Spleen	Spleen
2	chr4:54244600-54319200	Weak transcription	Pancreas	Pancrea
3	chr4:54246200-54319200	Weak transcription	Aorta	Aorta
4	chr4:54246600-54311200	Weak transcription	Small Intestine	intestine
5	chr4:54253400-54327200	Weak transcription	Colonic Mucosa	Colon
6	chr4:54256400-54294200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr4:54256600-54306200	Weak transcription	Stomach Mucosa	stomach
8	chr4:54256600-54319200	Weak transcription	Gastric	stomach
9	chr4:54257600-54296000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr4:54263800-54295000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr4:54264400-54294800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr4:54267200-54294600	Weak transcription	Hela-S3	cervix
13	chr4:54267800-54302400	Weak transcription	Psoas Muscle	Psoas
14	chr4:54268000-54295000	Weak transcription	Fetal Brain Male	brain
15	chr4:54268000-54310400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr4:54268000-54327600	Weak transcription	Colon Smooth Muscle	Colon
17	chr4:54268400-54319800	Weak transcription	A549	lung
18	chr4:54269400-54294800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr4:54269400-54303000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr4:54269600-54295000	Weak transcription	HMEC	breast
21	chr4:54270000-54330800	Weak transcription	Brain Substantia Nigra	brain
22	chr4:54270200-54295200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr4:54270200-54295400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr4:54270200-54316600	Weak transcription	Esophagus	oesophagus
25	chr4:54276400-54319000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr4:54276600-54294200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr4:54276600-54295000	Weak transcription	Thymus	Thymus
28	chr4:54276600-54295200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr4:54276600-54297000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr4:54276600-54302200	Weak transcription	Fetal Brain Female	brain
31	chr4:54276600-54319000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr4:54276600-54319000	Weak transcription	Lung	lung
33	chr4:54276800-54310600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr4:54276800-54316800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr4:54276800-54324800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr4:54277800-54296600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr4:54281000-54295000	Weak transcription	Ovary	ovary
38	chr4:54281600-54294800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr4:54281800-54295000	Weak transcription	K562	blood
40	chr4:54283000-54296200	Weak transcription	Brain Germinal Matrix	brain
41	chr4:54284600-54294200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr4:54286000-54294200	Weak transcription	Left Ventricle	heart
43	chr4:54286200-54294200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr4:54286200-54296000	Weak transcription	Fetal Intestine Small	intestine
45	chr4:54286200-54303000	Weak transcription	Fetal Stomach	stomach
46	chr4:54286200-54310800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr4:54286200-54316600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr4:54287800-54294200	Weak transcription	Brain Cingulate Gyrus	brain
49	chr4:54287800-54310400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr4:54288000-54295200	Weak transcription	Brain Anterior Caudate	brain

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