Variant report

Variant	rs2292580
Chromosome Location	chr4:54364394-54364395
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10000723	0.84[CEU][hapmap];0.81[CHB][hapmap]
rs10001337	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.86[AFR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10012328	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs13435672	0.81[JPT][hapmap]
rs17656576	0.82[JPT][hapmap]
rs17657105	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs17658423	0.91[CEU][hapmap];0.83[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17705995	0.84[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap]
rs1865510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28591554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28644315	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7349642	0.92[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap]
rs9992650	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54329600-54373600	Weak transcription	Brain Germinal Matrix	brain
2	chr4:54329800-54374000	Weak transcription	Left Ventricle	heart
3	chr4:54333000-54374800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:54343000-54385600	Weak transcription	Fetal Brain Female	brain
5	chr4:54343200-54376800	Weak transcription	Brain Anterior Caudate	brain
6	chr4:54343600-54364600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr4:54346400-54374000	Weak transcription	Right Ventricle	heart
8	chr4:54347600-54401800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr4:54355200-54378600	Weak transcription	Fetal Brain Male	brain
10	chr4:54356600-54373400	Weak transcription	Right Atrium	heart
11	chr4:54358600-54365400	Weak transcription	Lung	lung
12	chr4:54361400-54364600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr4:54362000-54366600	Enhancers	Ovary	ovary
14	chr4:54362400-54374200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr4:54362600-54364600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr4:54362600-54368000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr4:54362800-54365200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr4:54362800-54365200	Enhancers	Fetal Lung	lung
19	chr4:54362800-54366600	Enhancers	Fetal Muscle Leg	muscle
20	chr4:54362800-54373000	Weak transcription	Liver	Liver
21	chr4:54362800-54376000	Weak transcription	Brain Angular Gyrus	brain
22	chr4:54363200-54364400	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr4:54363200-54364400	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr4:54363200-54366200	Weak transcription	Pancreas	Pancrea
25	chr4:54363200-54373400	Weak transcription	Gastric	stomach
26	chr4:54363200-54384200	Weak transcription	Esophagus	oesophagus
27	chr4:54363400-54364400	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr4:54363400-54364400	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr4:54363400-54365400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr4:54363400-54365400	Enhancers	Fetal Stomach	stomach
31	chr4:54363400-54366800	Enhancers	HSMMtube	muscle
32	chr4:54363600-54364400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr4:54363600-54364400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr4:54363800-54364400	Enhancers	Muscle Satellite Cultured Cells	--
35	chr4:54363800-54364400	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr4:54363800-54364800	Weak transcription	Aorta	Aorta
37	chr4:54363800-54366200	Weak transcription	Fetal Kidney	kidney
38	chr4:54363800-54371400	Weak transcription	Duodenum Mucosa	Duodenum
39	chr4:54363800-54371800	Weak transcription	Fetal Intestine Large	intestine
40	chr4:54363800-54384000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr4:54364000-54364400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr4:54364000-54365400	Weak transcription	Fetal Muscle Trunk	muscle
43	chr4:54364000-54366200	Weak transcription	Fetal Intestine Small	intestine
44	chr4:54364200-54365800	Weak transcription	HSMM	muscle
45	chr4:54364200-54366000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr4:54364200-54367600	Weak transcription	Placenta	Placenta
47	chr4:54364200-54373200	Weak transcription	Adipose Nuclei	Adipose
48	chr4:54364200-54373200	Weak transcription	NHDF-Ad	bronchial

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