Variant report

Variant	rs17705995
Chromosome Location	chr4:54218515-54218516
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54218274..54220332-chr4:54242653..54244502,2	K562	blood:
2	chr4:54212699..54214471-chr4:54216075..54218598,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145216	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10000723	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10001337	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10012328	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10019672	0.87[AFR][1000 genomes]
rs10020534	0.80[AFR][1000 genomes]
rs10517283	1.00[YRI][hapmap]
rs13435672	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs1481823	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17656576	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs17656616	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs17657105	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs17658423	0.83[CEU][hapmap]
rs17713298	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1865510	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs2292580	0.84[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap]
rs7349642	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9968448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9994692	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9998819	1.00[YRI][hapmap]

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54170600-54230600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr4:54188200-54231200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:54201200-54220000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:54202200-54226000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:54206600-54220200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:54210400-54225600	Weak transcription	Small Intestine	intestine
7	chr4:54211400-54219200	Weak transcription	Fetal Intestine Small	intestine
8	chr4:54211600-54219600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr4:54211600-54220200	Weak transcription	Fetal Stomach	stomach
10	chr4:54212000-54220600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr4:54212000-54227200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr4:54212200-54220800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr4:54212600-54219200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr4:54212800-54219600	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr4:54213200-54220200	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr4:54213600-54228600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr4:54213800-54218600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr4:54213800-54230400	Weak transcription	Fetal Kidney	kidney
19	chr4:54214000-54218600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr4:54214000-54218800	Weak transcription	Adipose Nuclei	Adipose
21	chr4:54214000-54219200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr4:54214000-54221800	Weak transcription	Ovary	ovary
23	chr4:54214000-54230800	Weak transcription	Aorta	Aorta
24	chr4:54214000-54231200	Weak transcription	Lung	lung
25	chr4:54214200-54218600	Weak transcription	Fetal Muscle Leg	muscle
26	chr4:54214200-54218800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr4:54214200-54218800	Weak transcription	Gastric	stomach
28	chr4:54214200-54218800	Weak transcription	Left Ventricle	heart
29	chr4:54214200-54218800	Weak transcription	NHLF	lung
30	chr4:54214200-54219400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr4:54214200-54219400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr4:54214200-54220200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr4:54214200-54221800	Weak transcription	Pancreas	Pancrea
34	chr4:54214200-54221800	Weak transcription	Psoas Muscle	Psoas
35	chr4:54214200-54224000	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr4:54214200-54228200	Weak transcription	Esophagus	oesophagus
37	chr4:54214200-54228200	Weak transcription	Fetal Brain Female	brain
38	chr4:54214200-54228200	Weak transcription	NH-A	brain
39	chr4:54214200-54228800	Weak transcription	Colon Smooth Muscle	Colon
40	chr4:54214200-54229000	Weak transcription	HUVEC	blood vessel
41	chr4:54214200-54230000	Weak transcription	Fetal Heart	heart
42	chr4:54214200-54230000	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr4:54214200-54230400	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr4:54214200-54230800	Weak transcription	Brain Angular Gyrus	brain
45	chr4:54214200-54230800	Weak transcription	Brain Substantia Nigra	brain
46	chr4:54214200-54230800	Weak transcription	Fetal Lung	lung
47	chr4:54214200-54230800	Weak transcription	Right Ventricle	heart
48	chr4:54214200-54230800	Weak transcription	HSMMtube	muscle
49	chr4:54214200-54231000	Weak transcription	Brain Cingulate Gyrus	brain
50	chr4:54214200-54231000	Weak transcription	Rectal Smooth Muscle	rectum

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