Variant report

Variant	rs10001562
Chromosome Location	chr4:19455682-19455683
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10017144	0.84[AFR][1000 genomes]
rs10024291	0.81[AFR][1000 genomes]
rs10027111	0.88[YRI][hapmap];0.86[AFR][1000 genomes]
rs10031839	0.86[AFR][1000 genomes]
rs28674625	0.83[AFR][1000 genomes]
rs4371613	0.81[AFR][1000 genomes]
rs60467454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73095463	0.83[AFR][1000 genomes]
rs73097361	0.81[AFR][1000 genomes]
rs73099625	0.97[AFR][1000 genomes]
rs73099627	0.97[AFR][1000 genomes]
rs73099628	0.81[AFR][1000 genomes]
rs7686699	0.86[AFR][1000 genomes]
rs9997444	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv593785	chr4:19092157-19521956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19455400-19456000	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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