Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10001562	0.86[AFR][1000 genomes]
rs10009149	0.86[EUR][1000 genomes]
rs10017144	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10017883	0.86[EUR][1000 genomes]
rs10024291	0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10025939	0.91[ASN][1000 genomes]
rs10026163	0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10027111	1.00[CEU][hapmap];0.84[YRI][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10031839	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs17566280	0.86[EUR][1000 genomes]
rs28439386	0.86[EUR][1000 genomes]
rs28674625	0.97[AFR][1000 genomes]
rs2874685	0.86[EUR][1000 genomes]
rs28889123	0.86[EUR][1000 genomes]
rs4371613	0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs4425370	0.92[EUR][1000 genomes]
rs55880619	0.86[EUR][1000 genomes]
rs55964721	0.86[EUR][1000 genomes]
rs60467454	0.86[AFR][1000 genomes]
rs6826516	0.84[EUR][1000 genomes]
rs6857775	0.86[EUR][1000 genomes]
rs73092968	0.92[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs73099625	0.83[AFR][1000 genomes]
rs73099627	0.83[AFR][1000 genomes]
rs73099628	0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7682477	0.91[ASN][1000 genomes]
rs7686699	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7691992	0.96[EUR][1000 genomes]
rs9291401	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv593785	chr4:19092157-19521956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv878734	chr4:19474680-19598710	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv461286	chr4:19488871-19709795	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv593786	chr4:19488871-19709795	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19496800-19497400	Enhancers	Muscle Satellite Cultured Cells	--

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