Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10009149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10017144	0.86[EUR][1000 genomes]
rs10027111	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10031839	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17566280	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28439386	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28674625	0.87[ASN][1000 genomes]
rs2874685	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28889123	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4425370	0.87[ASN][1000 genomes]
rs55712235	0.88[EUR][1000 genomes]
rs55880619	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55964721	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6826516	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6846330	0.87[ASN][1000 genomes]
rs6846645	0.87[ASN][1000 genomes]
rs6857775	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73092968	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73249357	0.87[ASN][1000 genomes]
rs7686699	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7691992	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9291401	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9997444	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv593785	chr4:19092157-19521956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv829872	chr4:19268282-19432872	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19383400-19388400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr4:19383400-19388400	Weak transcription	HMEC	breast
3	chr4:19383800-19387600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:19383800-19388400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:19383800-19388600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:19385000-19388600	Weak transcription	Osteobl	bone

Quick Search: