Variant report

Variant	rs55712235
Chromosome Location	chr4:19308344-19308345
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10009149	0.88[EUR][1000 genomes]
rs10017883	0.88[EUR][1000 genomes]
rs10027111	0.82[EUR][1000 genomes]
rs10031839	0.82[EUR][1000 genomes]
rs17566280	0.88[EUR][1000 genomes]
rs28439386	0.88[EUR][1000 genomes]
rs2874685	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28889123	0.88[EUR][1000 genomes]
rs55880619	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55964721	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6826516	0.86[EUR][1000 genomes]
rs6857775	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73092968	0.86[EUR][1000 genomes]
rs7686699	0.82[EUR][1000 genomes]
rs7691992	0.82[EUR][1000 genomes]
rs9291401	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010078	chr4:19079379-19386522	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv593785	chr4:19092157-19521956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv829869	chr4:19128282-19310464	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv829872	chr4:19268282-19432872	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv525057	chr4:19306711-19310352	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19303600-19310000	Weak transcription	NHLF	lung
2	chr4:19307800-19311200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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