Variant report
| Variant | rs7691992 |
|---|---|
| Chromosome Location | chr4:19452678-19452679 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10009149 | 0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10017144 | 0.96[EUR][1000 genomes] |
| rs10017883 | 0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10027111 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10031839 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17566280 | 0.90[EUR][1000 genomes] |
| rs2200748 | 1.00[ASN][1000 genomes] |
| rs28439386 | 0.90[EUR][1000 genomes] |
| rs28674625 | 1.00[ASN][1000 genomes] |
| rs2874685 | 0.90[EUR][1000 genomes] |
| rs28889123 | 0.90[EUR][1000 genomes] |
| rs4425370 | 0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4593130 | 1.00[ASN][1000 genomes] |
| rs55712235 | 0.82[EUR][1000 genomes] |
| rs55880619 | 0.90[EUR][1000 genomes] |
| rs55964721 | 0.90[EUR][1000 genomes] |
| rs62296870 | 0.89[ASN][1000 genomes] |
| rs6826516 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6846330 | 1.00[ASN][1000 genomes] |
| rs6846645 | 1.00[ASN][1000 genomes] |
| rs6857775 | 0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs73092968 | 0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs73249357 | 1.00[ASN][1000 genomes] |
| rs73249365 | 1.00[ASN][1000 genomes] |
| rs73249369 | 1.00[ASN][1000 genomes] |
| rs73249379 | 1.00[ASN][1000 genomes] |
| rs73249381 | 1.00[ASN][1000 genomes] |
| rs7666136 | 1.00[ASN][1000 genomes] |
| rs7681473 | 0.89[ASN][1000 genomes] |
| rs7682588 | 1.00[ASN][1000 genomes] |
| rs7686699 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9291401 | 0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9997444 | 0.96[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv593785 | chr4:19092157-19521956 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv878732 | chr4:19172031-19660947 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv878733 | chr4:19335464-19928602 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:19451000-19455000 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
