Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10009149	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10017144	0.86[EUR][1000 genomes]
rs10017883	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10027111	0.90[EUR][1000 genomes]
rs10031839	0.90[EUR][1000 genomes]
rs17566280	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28439386	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28889123	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34553925	1.00[ASN][1000 genomes]
rs4425370	0.83[AMR][1000 genomes]
rs55712235	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55880619	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55964721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6826516	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6857775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73092968	0.94[EUR][1000 genomes]
rs7686699	0.90[EUR][1000 genomes]
rs7691992	0.90[EUR][1000 genomes]
rs9291401	1.00[EUR][1000 genomes]
rs9997444	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010078	chr4:19079379-19386522	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv593785	chr4:19092157-19521956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv829872	chr4:19268282-19432872	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19377800-19383000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:19380800-19383800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr4:19381200-19383800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:19381800-19383400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:19381800-19383400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:19381800-19383400	Enhancers	HMEC	breast
7	chr4:19381800-19383800	Enhancers	NHLF	lung
8	chr4:19382000-19383400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr4:19382000-19383400	Enhancers	NHDF-Ad	bronchial
10	chr4:19382000-19383400	Enhancers	Osteobl	bone
11	chr4:19382000-19383600	Enhancers	NHEK	skin
12	chr4:19382200-19383400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:19382400-19383200	Enhancers	NH-A	brain
14	chr4:19382400-19385600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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